miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 27512 0.7 0.218732
Target:  5'- cGGCC-GCCAGCuucUCGGCg-CGGUCg -3'
miRNA:   3'- -CCGGcCGGUCGucaAGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 1101 0.7 0.218732
Target:  5'- uGGCCGuGUCGcGCGGcaugUCGcGCaUCGGCCc -3'
miRNA:   3'- -CCGGC-CGGU-CGUCa---AGC-CGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 20225 0.7 0.222738
Target:  5'- cGGCCGGCUguuGGCcuugGGUgccuugcuccugggUCGGCUguugcugcugUUGGCCg -3'
miRNA:   3'- -CCGGCCGG---UCG----UCA--------------AGCCGA----------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 18572 0.7 0.224474
Target:  5'- aGGCCGcGCUcGCGGUgaCGGCc-UGGCCg -3'
miRNA:   3'- -CCGGC-CGGuCGUCAa-GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 26122 0.7 0.230344
Target:  5'- uGCCGGCauguguucgucgCGGCAGaUUUGGCgcagCGGCUc -3'
miRNA:   3'- cCGGCCG------------GUCGUC-AAGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 20615 0.7 0.236343
Target:  5'- aGGCgGcGUC-GCAGgUCGGUgUCGGCCu -3'
miRNA:   3'- -CCGgC-CGGuCGUCaAGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 25348 0.7 0.242473
Target:  5'- aGGCCGGCCAGU---UCGcauaGC--CGGCCa -3'
miRNA:   3'- -CCGGCCGGUCGucaAGC----CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 8650 0.7 0.242473
Target:  5'- cGCCGGCCuucaucgcGCGG-UCGGCauugCGuGCCg -3'
miRNA:   3'- cCGGCCGGu-------CGUCaAGCCGaa--GC-CGG- -5'
26720 3' -60 NC_005808.1 + 6181 0.7 0.244961
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 8236 0.69 0.255128
Target:  5'- cGGCC-GUCAGCAGcUUGcGCUUcaagCGGCCc -3'
miRNA:   3'- -CCGGcCGGUCGUCaAGC-CGAA----GCCGG- -5'
26720 3' -60 NC_005808.1 + 8802 0.69 0.255128
Target:  5'- cGGCCGcGCCGGuCAGUaccgaUCuGCUgggUCgGGCCa -3'
miRNA:   3'- -CCGGC-CGGUC-GUCA-----AGcCGA---AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 23514 0.69 0.255128
Target:  5'- aGGCCGGCCuGCAa-UCGcGUgaccUCGGCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaAGC-CGa---AGCCGg -5'
26720 3' -60 NC_005808.1 + 12586 0.69 0.255128
Target:  5'- gGGCgCGGCCGuGCAGUUgGaGCacgaUGGCCc -3'
miRNA:   3'- -CCG-GCCGGU-CGUCAAgC-CGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 8989 0.69 0.260997
Target:  5'- uGGCCGugccGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 11088 0.69 0.261656
Target:  5'- gGGUCGcgcGCgAGCAccuugUCGGCUgCGGCCa -3'
miRNA:   3'- -CCGGC---CGgUCGUca---AGCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 2588 0.69 0.261656
Target:  5'- aGCUugcaaGGCCAGCAGgUUGGCga-GGUCg -3'
miRNA:   3'- cCGG-----CCGGUCGUCaAGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 39050 0.69 0.261656
Target:  5'- cGGCgCGGUUGGCGGgacugcgCGGUgugCGGCUg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa-----GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 33605 0.69 0.261656
Target:  5'- cGGCaCGGCCAccGCugg-CGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGucaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 14267 0.69 0.261656
Target:  5'- uGGuuGGCCugcuGCAccaugcugUCGGCgaugCGGCCc -3'
miRNA:   3'- -CCggCCGGu---CGUca------AGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 24575 0.69 0.261656
Target:  5'- aGGCCGGCCA-CGGUcgGGCcgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUcGUCAagCCGaa--GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.