miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 17862 0.69 0.261656
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 4205 0.69 0.261656
Target:  5'- uGGCC-GCgAGCAcGUcgCGGCUUgCGGCUu -3'
miRNA:   3'- -CCGGcCGgUCGU-CAa-GCCGAA-GCCGG- -5'
26720 3' -60 NC_005808.1 + 28177 0.69 0.266976
Target:  5'- cGCCGuugcccacGcCCAGCAGgugCGGCgccuuguccaggUCGGCCa -3'
miRNA:   3'- cCGGC--------C-GGUCGUCaa-GCCGa-----------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 34487 0.69 0.26832
Target:  5'- cGCCGGCCGcGCGGUgcagGGCcucaaacgcuuUUgGGCCu -3'
miRNA:   3'- cCGGCCGGU-CGUCAag--CCG-----------AAgCCGG- -5'
26720 3' -60 NC_005808.1 + 24311 0.69 0.27512
Target:  5'- aGGUCGGCgAGCAGccgCGGgUcaggCGGCa -3'
miRNA:   3'- -CCGGCCGgUCGUCaa-GCCgAa---GCCGg -5'
26720 3' -60 NC_005808.1 + 13014 0.69 0.27512
Target:  5'- aGGCCGcGCagcGCAGU--GGCgaCGGCCu -3'
miRNA:   3'- -CCGGC-CGgu-CGUCAagCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 4363 0.69 0.277187
Target:  5'- cGGCCGGaCGGCAGgcggaugcgcagccaGGCgccgUCGcGCCg -3'
miRNA:   3'- -CCGGCCgGUCGUCaag------------CCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 19841 0.69 0.282057
Target:  5'- aGGCCGGUuuuguuCAGCAGcgUGGUgagUUCGGgCg -3'
miRNA:   3'- -CCGGCCG------GUCGUCaaGCCG---AAGCCgG- -5'
26720 3' -60 NC_005808.1 + 1462 0.69 0.282057
Target:  5'- cGGCgCGGUCGGCGGccuccUGGCa--GGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa---GCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 13682 0.69 0.282057
Target:  5'- aGGCCcuGGCUuugugggacgAGUGG-UCGGCgaCGGCCa -3'
miRNA:   3'- -CCGG--CCGG----------UCGUCaAGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 5715 0.68 0.288419
Target:  5'- cGCCagaaaugggGGCCuGCacGGUUCGGCUaaguuugUCGGCg -3'
miRNA:   3'- cCGG---------CCGGuCG--UCAAGCCGA-------AGCCGg -5'
26720 3' -60 NC_005808.1 + 16652 0.68 0.289133
Target:  5'- uGCCGGCCgacgagggAGCGGacUCGGUUuuacccUCGGCa -3'
miRNA:   3'- cCGGCCGG--------UCGUCa-AGCCGA------AGCCGg -5'
26720 3' -60 NC_005808.1 + 11294 0.68 0.289133
Target:  5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3'
miRNA:   3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5'
26720 3' -60 NC_005808.1 + 514 0.68 0.296347
Target:  5'- cGG-CGGCUuGCAGg-CGGUucugUUCGGCCg -3'
miRNA:   3'- -CCgGCCGGuCGUCaaGCCG----AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 18281 0.68 0.296347
Target:  5'- uGCCGGCCgucAGCGGgccggUGGCgaCGGUg -3'
miRNA:   3'- cCGGCCGG---UCGUCaa---GCCGaaGCCGg -5'
26720 3' -60 NC_005808.1 + 31013 0.68 0.296347
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 12287 0.68 0.303699
Target:  5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3'
miRNA:   3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 13126 0.68 0.307428
Target:  5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3'
miRNA:   3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5'
26720 3' -60 NC_005808.1 + 7706 0.68 0.309682
Target:  5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3'
miRNA:   3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 23535 0.68 0.311192
Target:  5'- aGG-CGGCgCAcGCGGUcgaUGGCcUCGGCCg -3'
miRNA:   3'- -CCgGCCG-GU-CGUCAa--GCCGaAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.