Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26720 | 3' | -60 | NC_005808.1 | + | 33485 | 0.68 | 0.311192 |
Target: 5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 33557 | 0.68 | 0.311192 |
Target: 5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 40733 | 0.68 | 0.314228 |
Target: 5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3' miRNA: 3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 10770 | 0.68 | 0.318824 |
Target: 5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3' miRNA: 3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 29263 | 0.68 | 0.318824 |
Target: 5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3' miRNA: 3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 38007 | 0.68 | 0.318824 |
Target: 5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3' miRNA: 3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 17089 | 0.68 | 0.318824 |
Target: 5'- aGCCGGC--GCGGUucUCGGCcg-GGCCu -3' miRNA: 3'- cCGGCCGguCGUCA--AGCCGaagCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 29738 | 0.68 | 0.318824 |
Target: 5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3' miRNA: 3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 19099 | 0.68 | 0.326595 |
Target: 5'- aGGCCGGCCuGCgaacccuucgGGUagaUGGUaugcagggugUUCGGCCc -3' miRNA: 3'- -CCGGCCGGuCG----------UCAa--GCCG----------AAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 11839 | 0.68 | 0.326595 |
Target: 5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3' miRNA: 3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 18699 | 0.67 | 0.334507 |
Target: 5'- gGGCCucGGUCAGCAGcagcgcaUCGGUacggCGGCa -3' miRNA: 3'- -CCGG--CCGGUCGUCa------AGCCGaa--GCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 24422 | 0.67 | 0.342557 |
Target: 5'- aGCCGGCCcgauuuGuCGGUgccgcgcgCGGCcUCGGCg -3' miRNA: 3'- cCGGCCGGu-----C-GUCAa-------GCCGaAGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 4884 | 0.67 | 0.342557 |
Target: 5'- aGCgCGGCgaCGGCGGccUCGuuUUCGGCCa -3' miRNA: 3'- cCG-GCCG--GUCGUCa-AGCcgAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 18461 | 0.67 | 0.342557 |
Target: 5'- cGGUCGcggcGCCGGCGGcgUCGGCcgaUUCGuCCa -3' miRNA: 3'- -CCGGC----CGGUCGUCa-AGCCG---AAGCcGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 42217 | 0.67 | 0.342557 |
Target: 5'- cGCUGGCCGcGCucaaUCGGCa--GGCCa -3' miRNA: 3'- cCGGCCGGU-CGuca-AGCCGaagCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 24647 | 0.67 | 0.350747 |
Target: 5'- uGCCGGCgGGcCAGgaUGGUguugUCGcGCCc -3' miRNA: 3'- cCGGCCGgUC-GUCaaGCCGa---AGC-CGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 4801 | 0.67 | 0.350747 |
Target: 5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3' miRNA: 3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 25592 | 0.67 | 0.359075 |
Target: 5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3' miRNA: 3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 5266 | 0.67 | 0.367539 |
Target: 5'- -aCCGGCCAccguGUugauGUucgCGGCguugUCGGCCa -3' miRNA: 3'- ccGGCCGGU----CGu---CAa--GCCGa---AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 11124 | 0.67 | 0.367539 |
Target: 5'- uGGUucaaaCGuGCgAGCAGUUCGGCcugcugcUgGGCCg -3' miRNA: 3'- -CCG-----GC-CGgUCGUCAAGCCGa------AgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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