Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26720 | 3' | -60 | NC_005808.1 | + | 9201 | 0.68 | 0.311192 |
Target: 5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3' miRNA: 3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 23535 | 0.68 | 0.311192 |
Target: 5'- aGG-CGGCgCAcGCGGUcgaUGGCcUCGGCCg -3' miRNA: 3'- -CCgGCCG-GU-CGUCAa--GCCGaAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 13126 | 0.68 | 0.307428 |
Target: 5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3' miRNA: 3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 12287 | 0.68 | 0.303699 |
Target: 5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3' miRNA: 3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 18281 | 0.68 | 0.296347 |
Target: 5'- uGCCGGCCgucAGCGGgccggUGGCgaCGGUg -3' miRNA: 3'- cCGGCCGG---UCGUCaa---GCCGaaGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 514 | 0.68 | 0.296347 |
Target: 5'- cGG-CGGCUuGCAGg-CGGUucugUUCGGCCg -3' miRNA: 3'- -CCgGCCGGuCGUCaaGCCG----AAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 16652 | 0.68 | 0.289133 |
Target: 5'- uGCCGGCCgacgagggAGCGGacUCGGUUuuacccUCGGCa -3' miRNA: 3'- cCGGCCGG--------UCGUCa-AGCCGA------AGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 22983 | 0.74 | 0.117842 |
Target: 5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3' miRNA: 3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 14588 | 0.71 | 0.209805 |
Target: 5'- uGCCGGCggccgauccgcuuuuCAGCAGUgcgUCGGCUUccaugcuucCGGCg -3' miRNA: 3'- cCGGCCG---------------GUCGUCA---AGCCGAA---------GCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 22798 | 0.71 | 0.207623 |
Target: 5'- gGGCCGGUCAGCauGGUgcCGGac-UGGCCc -3' miRNA: 3'- -CCGGCCGGUCG--UCAa-GCCgaaGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 27700 | 0.71 | 0.207623 |
Target: 5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3' miRNA: 3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 20331 | 0.71 | 0.197005 |
Target: 5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3' miRNA: 3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 10836 | 0.71 | 0.191876 |
Target: 5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3' miRNA: 3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 403 | 0.71 | 0.186864 |
Target: 5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3' miRNA: 3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 16037 | 0.71 | 0.186864 |
Target: 5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3' miRNA: 3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 13443 | 0.71 | 0.186864 |
Target: 5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3' miRNA: 3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 38436 | 0.71 | 0.181968 |
Target: 5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3' miRNA: 3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 35181 | 0.72 | 0.154919 |
Target: 5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3' miRNA: 3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 28557 | 0.73 | 0.146743 |
Target: 5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3' miRNA: 3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5' |
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26720 | 3' | -60 | NC_005808.1 | + | 28635 | 0.79 | 0.047687 |
Target: 5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3' miRNA: 3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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