miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 10900 0.68 0.311192
Target:  5'- gGGCUGGUcaggcggugcugCAGCAGUUacUGGUgcuugUGGCCg -3'
miRNA:   3'- -CCGGCCG------------GUCGUCAA--GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 11088 0.69 0.261656
Target:  5'- gGGUCGcgcGCgAGCAccuugUCGGCUgCGGCCa -3'
miRNA:   3'- -CCGGC---CGgUCGUca---AGCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 11124 0.67 0.367539
Target:  5'- uGGUucaaaCGuGCgAGCAGUUCGGCcugcugcUgGGCCg -3'
miRNA:   3'- -CCG-----GC-CGgUCGUCAAGCCGa------AgCCGG- -5'
26720 3' -60 NC_005808.1 + 11294 0.68 0.289133
Target:  5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3'
miRNA:   3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5'
26720 3' -60 NC_005808.1 + 11505 0.67 0.350747
Target:  5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3'
miRNA:   3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5'
26720 3' -60 NC_005808.1 + 11839 0.68 0.326595
Target:  5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3'
miRNA:   3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5'
26720 3' -60 NC_005808.1 + 12009 0.85 0.017792
Target:  5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 12287 0.68 0.303699
Target:  5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3'
miRNA:   3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 12471 0.74 0.114626
Target:  5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3'
miRNA:   3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 12586 0.69 0.255128
Target:  5'- gGGCgCGGCCGuGCAGUUgGaGCacgaUGGCCc -3'
miRNA:   3'- -CCG-GCCGGU-CGUCAAgC-CGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 13014 0.69 0.27512
Target:  5'- aGGCCGcGCagcGCAGU--GGCgaCGGCCu -3'
miRNA:   3'- -CCGGC-CGgu-CGUCAagCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 13126 0.68 0.307428
Target:  5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3'
miRNA:   3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5'
26720 3' -60 NC_005808.1 + 13305 0.68 0.318824
Target:  5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3'
miRNA:   3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5'
26720 3' -60 NC_005808.1 + 13311 0.7 0.213115
Target:  5'- gGGCCGGCguuguaGGCGGcguaGGCUuUCGGCa -3'
miRNA:   3'- -CCGGCCGg-----UCGUCaag-CCGA-AGCCGg -5'
26720 3' -60 NC_005808.1 + 13350 0.68 0.318824
Target:  5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3'
miRNA:   3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5'
26720 3' -60 NC_005808.1 + 13443 0.71 0.186864
Target:  5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3'
miRNA:   3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5'
26720 3' -60 NC_005808.1 + 13682 0.69 0.282057
Target:  5'- aGGCCcuGGCUuugugggacgAGUGG-UCGGCgaCGGCCa -3'
miRNA:   3'- -CCGG--CCGG----------UCGUCaAGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 13745 0.66 0.421133
Target:  5'- uGGCgCGGCgCugGGaCAGcUUCGGCaagucCGGCCg -3'
miRNA:   3'- -CCG-GCCG-G--UC-GUC-AAGCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 13856 0.66 0.393746
Target:  5'- cGCCuGCCGGaa----GGUUUCGGCCu -3'
miRNA:   3'- cCGGcCGGUCgucaagCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 14133 0.75 0.096995
Target:  5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.