miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 24210 0.67 0.359075
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 11505 0.67 0.350747
Target:  5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3'
miRNA:   3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5'
26720 3' -60 NC_005808.1 + 35326 0.67 0.342557
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 2248 0.67 0.350747
Target:  5'- gGGCCuuGGCCGGCAGUUCGa---CGcGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCAAGCcgaaGC-CGg -5'
26720 3' -60 NC_005808.1 + 10900 0.68 0.311192
Target:  5'- gGGCUGGUcaggcggugcugCAGCAGUUacUGGUgcuugUGGCCg -3'
miRNA:   3'- -CCGGCCG------------GUCGUCAA--GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 27691 0.68 0.318824
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5'
26720 3' -60 NC_005808.1 + 13305 0.68 0.318824
Target:  5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3'
miRNA:   3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5'
26720 3' -60 NC_005808.1 + 13350 0.68 0.318824
Target:  5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3'
miRNA:   3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5'
26720 3' -60 NC_005808.1 + 17248 0.68 0.326595
Target:  5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3'
miRNA:   3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 39771 0.67 0.332119
Target:  5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3'
miRNA:   3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5'
26720 3' -60 NC_005808.1 + 36374 0.67 0.334507
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5'
26720 3' -60 NC_005808.1 + 34204 0.67 0.334507
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26720 3' -60 NC_005808.1 + 26065 0.67 0.342557
Target:  5'- aGG-CGGCCuGUA---CGGCUauaUCGGCCa -3'
miRNA:   3'- -CCgGCCGGuCGUcaaGCCGA---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 14770 0.67 0.342557
Target:  5'- cGGCCGGCgccaccgcgggCAGCGcgcgcgaggacGUgcugCGGCUgcgCGGCg -3'
miRNA:   3'- -CCGGCCG-----------GUCGU-----------CAa---GCCGAa--GCCGg -5'
26720 3' -60 NC_005808.1 + 32937 0.68 0.326595
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 13856 0.66 0.393746
Target:  5'- cGCCuGCCGGaa----GGUUUCGGCCu -3'
miRNA:   3'- cCGGcCGGUCgucaagCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 14977 0.66 0.384876
Target:  5'- cGCCGGUCGcCAGaaUGGCgUCGGCa -3'
miRNA:   3'- cCGGCCGGUcGUCaaGCCGaAGCCGg -5'
26720 3' -60 NC_005808.1 + 36252 0.67 0.376141
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5'
26720 3' -60 NC_005808.1 + 21017 0.67 0.376141
Target:  5'- uGCCGGCUuccuucggGGUcaucuucauguuGGUgagCGGCaugUCGGCCu -3'
miRNA:   3'- cCGGCCGG--------UCG------------UCAa--GCCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 25592 0.67 0.359075
Target:  5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3'
miRNA:   3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.