miRNA display CGI


Results 41 - 60 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 4093 0.82 0.032206
Target:  5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3'
miRNA:   3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5'
26720 3' -60 NC_005808.1 + 7432 1.12 0.000139
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 32260 0.66 0.402746
Target:  5'- aGGCacacGCC-GCAGcgaCGGCUaCGGCCu -3'
miRNA:   3'- -CCGgc--CGGuCGUCaa-GCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 27691 0.68 0.318824
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5'
26720 3' -60 NC_005808.1 + 24210 0.67 0.359075
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 14770 0.67 0.342557
Target:  5'- cGGCCGGCgccaccgcgggCAGCGcgcgcgaggacGUgcugCGGCUgcgCGGCg -3'
miRNA:   3'- -CCGGCCG-----------GUCGU-----------CAa---GCCGAa--GCCGg -5'
26720 3' -60 NC_005808.1 + 36374 0.67 0.334507
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5'
26720 3' -60 NC_005808.1 + 7706 0.68 0.309682
Target:  5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3'
miRNA:   3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 4363 0.69 0.277187
Target:  5'- cGGCCGGaCGGCAGgcggaugcgcagccaGGCgccgUCGcGCCg -3'
miRNA:   3'- -CCGGCCgGUCGUCaag------------CCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 17862 0.69 0.261656
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 9675 0.71 0.181968
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 29066 0.72 0.167956
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26720 3' -60 NC_005808.1 + 5100 0.73 0.138963
Target:  5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3'
miRNA:   3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5'
26720 3' -60 NC_005808.1 + 7265 0.75 0.108439
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 41573 0.67 0.367539
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 33437 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33389 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 26122 0.7 0.230344
Target:  5'- uGCCGGCauguguucgucgCGGCAGaUUUGGCgcagCGGCUc -3'
miRNA:   3'- cCGGCCG------------GUCGUC-AAGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 38436 0.71 0.181968
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26720 3' -60 NC_005808.1 + 20615 0.7 0.236343
Target:  5'- aGGCgGcGUC-GCAGgUCGGUgUCGGCCu -3'
miRNA:   3'- -CCGgC-CGGuCGUCaAGCCGaAGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.