miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 7432 1.12 0.000139
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 13305 0.68 0.318824
Target:  5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3'
miRNA:   3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5'
26720 3' -60 NC_005808.1 + 27691 0.68 0.318824
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5'
26720 3' -60 NC_005808.1 + 4205 0.69 0.261656
Target:  5'- uGGCC-GCgAGCAcGUcgCGGCUUgCGGCUu -3'
miRNA:   3'- -CCGGcCGgUCGU-CAa-GCCGAA-GCCGG- -5'
26720 3' -60 NC_005808.1 + 20285 0.72 0.177186
Target:  5'- cGGCaCGGCCAGCAGcaUCGuGCUgcccgacuUCGacGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCa-AGC-CGA--------AGC--CGG- -5'
26720 3' -60 NC_005808.1 + 34204 0.67 0.334507
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26720 3' -60 NC_005808.1 + 17248 0.68 0.326595
Target:  5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3'
miRNA:   3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 1762 0.73 0.142804
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 11294 0.68 0.289133
Target:  5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3'
miRNA:   3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5'
26720 3' -60 NC_005808.1 + 4363 0.69 0.277187
Target:  5'- cGGCCGGaCGGCAGgcggaugcgcagccaGGCgccgUCGcGCCg -3'
miRNA:   3'- -CCGGCCgGUCGUCaag------------CCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 33779 0.73 0.130843
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5'
26720 3' -60 NC_005808.1 + 12471 0.74 0.114626
Target:  5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3'
miRNA:   3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 35326 0.67 0.342557
Target:  5'- cGGCCccgaGGCCaagcAGCAGUUCaagacCUgggCGGCCg -3'
miRNA:   3'- -CCGG----CCGG----UCGUCAAGcc---GAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 26065 0.67 0.342557
Target:  5'- aGG-CGGCCuGUA---CGGCUauaUCGGCCa -3'
miRNA:   3'- -CCgGCCGGuCGUcaaGCCGA---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 10074 0.68 0.311949
Target:  5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3'
miRNA:   3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 6181 0.7 0.244961
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 24322 0.71 0.181485
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 7265 0.75 0.108439
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 34487 0.69 0.26832
Target:  5'- cGCCGGCCGcGCGGUgcagGGCcucaaacgcuuUUgGGCCu -3'
miRNA:   3'- cCGGCCGGU-CGUCAag--CCG-----------AAgCCGG- -5'
26720 3' -60 NC_005808.1 + 31013 0.68 0.296347
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.