miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 1762 0.73 0.142804
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 28557 0.73 0.146743
Target:  5'- cGGCC-GCCGGCcaucgCGGCgcgcacgUCGGCCa -3'
miRNA:   3'- -CCGGcCGGUCGucaa-GCCGa------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 19768 0.73 0.15078
Target:  5'- uGUCGGCUgucGGCAGcgCGGCgaagUCgGGCCa -3'
miRNA:   3'- cCGGCCGG---UCGUCaaGCCGa---AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 4040 0.72 0.154919
Target:  5'- aGCCGGCC-GCGGcgagCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGuCGUCaa--GCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 35181 0.72 0.154919
Target:  5'- uGGCCGGCCAucCGGUgccCGGCUUCaagcugguggaaGGUCg -3'
miRNA:   3'- -CCGGCCGGUc-GUCAa--GCCGAAG------------CCGG- -5'
26720 3' -60 NC_005808.1 + 29066 0.72 0.167956
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5'
26720 3' -60 NC_005808.1 + 20285 0.72 0.177186
Target:  5'- cGGCaCGGCCAGCAGcaUCGuGCUgcccgacuUCGacGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCa-AGC-CGA--------AGC--CGG- -5'
26720 3' -60 NC_005808.1 + 24322 0.71 0.181485
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 9675 0.71 0.181968
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 38436 0.71 0.181968
Target:  5'- cGGCCGGCUAcCAGaUCGuGCUgUCGGUa -3'
miRNA:   3'- -CCGGCCGGUcGUCaAGC-CGA-AGCCGg -5'
26720 3' -60 NC_005808.1 + 403 0.71 0.186864
Target:  5'- cGCCcaCCAGCAGcaCGGCggugaucgUCGGCCg -3'
miRNA:   3'- cCGGccGGUCGUCaaGCCGa-------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 16037 0.71 0.186864
Target:  5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3'
miRNA:   3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 13443 0.71 0.186864
Target:  5'- aGGCCcGCCAGCuuggCGGCcUCGGgCg -3'
miRNA:   3'- -CCGGcCGGUCGucaaGCCGaAGCCgG- -5'
26720 3' -60 NC_005808.1 + 10836 0.71 0.191876
Target:  5'- cGGCuCGGUCuugagguggucgAGCAGgcccugcgUGGCUUCGGUCg -3'
miRNA:   3'- -CCG-GCCGG------------UCGUCaa------GCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 20331 0.71 0.197005
Target:  5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3'
miRNA:   3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5'
26720 3' -60 NC_005808.1 + 22798 0.71 0.207623
Target:  5'- gGGCCGGUCAGCauGGUgcCGGac-UGGCCc -3'
miRNA:   3'- -CCGGCCGGUCG--UCAa-GCCgaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 27700 0.71 0.207623
Target:  5'- aGGCCGcgcGCCGGCAG--CGGCUcgccgcCGGUCa -3'
miRNA:   3'- -CCGGC---CGGUCGUCaaGCCGAa-----GCCGG- -5'
26720 3' -60 NC_005808.1 + 14588 0.71 0.209805
Target:  5'- uGCCGGCggccgauccgcuuuuCAGCAGUgcgUCGGCUUccaugcuucCGGCg -3'
miRNA:   3'- cCGGCCG---------------GUCGUCA---AGCCGAA---------GCCGg -5'
26720 3' -60 NC_005808.1 + 21259 0.7 0.213115
Target:  5'- gGGUCGaugcCCAGCAugUCGGCguaagugUCGGCCc -3'
miRNA:   3'- -CCGGCc---GGUCGUcaAGCCGa------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 13311 0.7 0.213115
Target:  5'- gGGCCGGCguuguaGGCGGcguaGGCUuUCGGCa -3'
miRNA:   3'- -CCGGCCGg-----UCGUCaag-CCGA-AGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.