miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 6181 0.7 0.244961
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 7432 1.12 0.000139
Target:  5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3'
miRNA:   3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 4093 0.82 0.032206
Target:  5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3'
miRNA:   3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5'
26720 3' -60 NC_005808.1 + 19768 0.73 0.15078
Target:  5'- uGUCGGCUgucGGCAGcgCGGCgaagUCgGGCCa -3'
miRNA:   3'- cCGGCCGG---UCGUCaaGCCGa---AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 4040 0.72 0.154919
Target:  5'- aGCCGGCC-GCGGcgagCGGCa--GGCCa -3'
miRNA:   3'- cCGGCCGGuCGUCaa--GCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 5212 0.79 0.054103
Target:  5'- uGCUGGCCugcaaccggauacccAGCAGUUCGcGCagUUCGGCCg -3'
miRNA:   3'- cCGGCCGG---------------UCGUCAAGC-CG--AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 33779 0.73 0.130843
Target:  5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3'
miRNA:   3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5'
26720 3' -60 NC_005808.1 + 1762 0.73 0.142804
Target:  5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 9675 0.71 0.181968
Target:  5'- uGGCCGaacaGCCAGCcGUgcaGGCcgUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGuCAag-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 8989 0.69 0.260997
Target:  5'- uGGCCGugccGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 36214 0.66 0.430514
Target:  5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5'
26720 3' -60 NC_005808.1 + 7265 0.75 0.108439
Target:  5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3'
miRNA:   3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 32085 0.75 0.102281
Target:  5'- uGGCCGGCgguCAGCAGUUCGaucaagaGCa-CGGCCc -3'
miRNA:   3'- -CCGGCCG---GUCGUCAAGC-------CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 20285 0.72 0.177186
Target:  5'- cGGCaCGGCCAGCAGcaUCGuGCUgcccgacuUCGacGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCa-AGC-CGA--------AGC--CGG- -5'
26720 3' -60 NC_005808.1 + 24322 0.71 0.181485
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 12471 0.74 0.114626
Target:  5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3'
miRNA:   3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 23514 0.69 0.255128
Target:  5'- aGGCCGGCCuGCAa-UCGcGUgaccUCGGCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaAGC-CGa---AGCCGg -5'
26720 3' -60 NC_005808.1 + 17862 0.69 0.261656
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 5100 0.73 0.138963
Target:  5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3'
miRNA:   3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5'
26720 3' -60 NC_005808.1 + 29066 0.72 0.167956
Target:  5'- aGG-CGGCCGaCAGUUCGGCgcggaCGGCa -3'
miRNA:   3'- -CCgGCCGGUcGUCAAGCCGaa---GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.