miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 36374 0.67 0.334507
Target:  5'- aGGCCcuGGCCGaaggcaaaacGCAGaacccggCGGCUaUCGGCUu -3'
miRNA:   3'- -CCGG--CCGGU----------CGUCaa-----GCCGA-AGCCGG- -5'
26720 3' -60 NC_005808.1 + 34204 0.67 0.334507
Target:  5'- uGGCCGacuggcuacgcaGCCAGCgcgAGgcCGGgUUCGaGCCg -3'
miRNA:   3'- -CCGGC------------CGGUCG---UCaaGCCgAAGC-CGG- -5'
26720 3' -60 NC_005808.1 + 18699 0.67 0.334507
Target:  5'- gGGCCucGGUCAGCAGcagcgcaUCGGUacggCGGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCa------AGCCGaa--GCCGg -5'
26720 3' -60 NC_005808.1 + 39771 0.67 0.332119
Target:  5'- uGGCCuuuccucaauagguGGUCAGcCGGUUCuguccuGCUUCGGCg -3'
miRNA:   3'- -CCGG--------------CCGGUC-GUCAAGc-----CGAAGCCGg -5'
26720 3' -60 NC_005808.1 + 32937 0.68 0.326595
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 17248 0.68 0.326595
Target:  5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3'
miRNA:   3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 11839 0.68 0.326595
Target:  5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3'
miRNA:   3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5'
26720 3' -60 NC_005808.1 + 19099 0.68 0.326595
Target:  5'- aGGCCGGCCuGCgaacccuucgGGUagaUGGUaugcagggugUUCGGCCc -3'
miRNA:   3'- -CCGGCCGGuCG----------UCAa--GCCG----------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 29263 0.68 0.318824
Target:  5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3'
miRNA:   3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5'
26720 3' -60 NC_005808.1 + 13350 0.68 0.318824
Target:  5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3'
miRNA:   3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5'
26720 3' -60 NC_005808.1 + 13305 0.68 0.318824
Target:  5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3'
miRNA:   3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5'
26720 3' -60 NC_005808.1 + 27691 0.68 0.318824
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5'
26720 3' -60 NC_005808.1 + 29738 0.68 0.318824
Target:  5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3'
miRNA:   3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 17089 0.68 0.318824
Target:  5'- aGCCGGC--GCGGUucUCGGCcg-GGCCu -3'
miRNA:   3'- cCGGCCGguCGUCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 38007 0.68 0.318824
Target:  5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3'
miRNA:   3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 10770 0.68 0.318824
Target:  5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3'
miRNA:   3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 40733 0.68 0.314228
Target:  5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3'
miRNA:   3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 10074 0.68 0.311949
Target:  5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3'
miRNA:   3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 9201 0.68 0.311192
Target:  5'- uGGCCuGCuCGGCGGcgCGGCgcacguucugCGGCg -3'
miRNA:   3'- -CCGGcCG-GUCGUCaaGCCGaa--------GCCGg -5'
26720 3' -60 NC_005808.1 + 33197 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.