Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26721 | 3' | -60.2 | NC_005808.1 | + | 39045 | 0.66 | 0.367971 |
Target: 5'- --aGCCCGCUGCuGcgCuGUUCGGCGg -3' miRNA: 3'- uugCGGGUGGCGuCuaG-CAGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33784 | 0.66 | 0.334329 |
Target: 5'- --gGCCCgACCcaGCAGAUCGguacugaCCGGCGc -3' miRNA: 3'- uugCGGG-UGG--CGUCUAGCa------GGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 27435 | 0.66 | 0.367971 |
Target: 5'- cGCGCCCggcgGCCGCAGGcccuggCG-CUGGUAUg -3' miRNA: 3'- uUGCGGG----UGGCGUCUa-----GCaGGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 13385 | 0.66 | 0.342524 |
Target: 5'- cAUGCCCAgCGCGcGGUUGUaggCGGCAUc -3' miRNA: 3'- uUGCGGGUgGCGU-CUAGCAg--GCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 1168 | 0.66 | 0.342524 |
Target: 5'- cACGCCCcacauagucucGCCGCcgGGGUCGgCCGGguUg -3' miRNA: 3'- uUGCGGG-----------UGGCG--UCUAGCaGGCCguA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 39858 | 0.66 | 0.334329 |
Target: 5'- cACGCCCgagcagcgccggGCCGCGcucaagCGUCCGGCc- -3' miRNA: 3'- uUGCGGG------------UGGCGUcua---GCAGGCCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33874 | 0.66 | 0.326278 |
Target: 5'- cGCGCCCGCCggGCAcAUCuucguGUUCGGCAg -3' miRNA: 3'- uUGCGGGUGG--CGUcUAG-----CAGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 621 | 0.66 | 0.326278 |
Target: 5'- --aGCagCGCCGUGGAcacggCGUCCGGCGUc -3' miRNA: 3'- uugCGg-GUGGCGUCUa----GCAGGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 41770 | 0.66 | 0.326278 |
Target: 5'- -cUGCCCACCugGCcGA-CGUUCGGCAa -3' miRNA: 3'- uuGCGGGUGG--CGuCUaGCAGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 42391 | 0.66 | 0.367971 |
Target: 5'- uGCGCCaguuCGCCGU--GUCGcCCGGCAg -3' miRNA: 3'- uUGCGG----GUGGCGucUAGCaGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 25999 | 0.66 | 0.350864 |
Target: 5'- cGGCGCcaacaCCAUCGCGuGGucggccUCGUCCGGCGc -3' miRNA: 3'- -UUGCG-----GGUGGCGU-CU------AGCAGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 35183 | 0.66 | 0.340874 |
Target: 5'- gGGCGCCCGCUGCucuauacccUGUCCGGUc- -3' miRNA: 3'- -UUGCGGGUGGCGucua-----GCAGGCCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 28168 | 0.66 | 0.367971 |
Target: 5'- -uCGCCCaacacgguGCCGCAGGcgCGcCUGGCGa -3' miRNA: 3'- uuGCGGG--------UGGCGUCUa-GCaGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 12520 | 0.67 | 0.310611 |
Target: 5'- uGGCGCCCgggcGCCGCacaaaGGAUauuUCCGGCAc -3' miRNA: 3'- -UUGCGGG----UGGCG-----UCUAgc-AGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 24330 | 0.67 | 0.318372 |
Target: 5'- uGACgGCCgGCaaguucucggCGCAGGUCGUgaCCGGCAUc -3' miRNA: 3'- -UUG-CGGgUG----------GCGUCUAGCA--GGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33650 | 0.67 | 0.28101 |
Target: 5'- nACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 24578 | 0.67 | 0.295522 |
Target: 5'- -cCGgCCACgGuCGGGcCGUCCGGCGUg -3' miRNA: 3'- uuGCgGGUGgC-GUCUaGCAGGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 23434 | 0.67 | 0.28101 |
Target: 5'- cGACGCCgGCCgggauGCGGAUgGUUCGcGCGUa -3' miRNA: 3'- -UUGCGGgUGG-----CGUCUAgCAGGC-CGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 28649 | 0.67 | 0.28101 |
Target: 5'- cGCGCgCAgUGcCAGAUCGgugCCGGCGg -3' miRNA: 3'- uUGCGgGUgGC-GUCUAGCa--GGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33626 | 0.68 | 0.260311 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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