miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26721 3' -60.2 NC_005808.1 + 33536 0.68 0.260311
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26721 3' -60.2 NC_005808.1 + 33584 0.68 0.260311
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26721 3' -60.2 NC_005808.1 + 33626 0.68 0.260311
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26721 3' -60.2 NC_005808.1 + 13289 0.68 0.267069
Target:  5'- cAGCGCCgAUUGCAGcgCGccggggCCGGCGUu -3'
miRNA:   3'- -UUGCGGgUGGCGUCuaGCa-----GGCCGUA- -5'
26721 3' -60.2 NC_005808.1 + 10280 0.68 0.273969
Target:  5'- gGAUGCCC--UGUAGGUCGUCCaGCAc -3'
miRNA:   3'- -UUGCGGGugGCGUCUAGCAGGcCGUa -5'
26721 3' -60.2 NC_005808.1 + 30916 0.69 0.224427
Target:  5'- --aGUCCGCCGCAGucugacaccuuggcaGugguguuUCGUCCGGCGUa -3'
miRNA:   3'- uugCGGGUGGCGUC---------------U-------AGCAGGCCGUA- -5'
26721 3' -60.2 NC_005808.1 + 28000 0.69 0.216854
Target:  5'- cGACGCaCUGCUgaaaaGCGGAUCGgccgCCGGCAUc -3'
miRNA:   3'- -UUGCG-GGUGG-----CGUCUAGCa---GGCCGUA- -5'
26721 3' -60.2 NC_005808.1 + 400 0.69 0.234667
Target:  5'- gGGCGCCCACCaGCAgcacggcgguGAUCGU-CGGCc- -3'
miRNA:   3'- -UUGCGGGUGG-CGU----------CUAGCAgGCCGua -5'
26721 3' -60.2 NC_005808.1 + 20438 0.7 0.200211
Target:  5'- uGCGCCaguaGCCGCAGGcccUCGuUCCGGUu- -3'
miRNA:   3'- uUGCGGg---UGGCGUCU---AGC-AGGCCGua -5'
26721 3' -60.2 NC_005808.1 + 34828 0.71 0.170242
Target:  5'- gGACGCCgGC-GCAGAUCGcgCCGGUg- -3'
miRNA:   3'- -UUGCGGgUGgCGUCUAGCa-GGCCGua -5'
26721 3' -60.2 NC_005808.1 + 24672 0.72 0.125222
Target:  5'- cGCGCCCGCCGCGGGccaCGUCCacgcccaGGCu- -3'
miRNA:   3'- uUGCGGGUGGCGUCUa--GCAGG-------CCGua -5'
26721 3' -60.2 NC_005808.1 + 5897 1.02 0.000589
Target:  5'- cAACGCCCACCGCAGAUCGUCCGGCAUc -3'
miRNA:   3'- -UUGCGGGUGGCGUCUAGCAGGCCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.