Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26721 | 3' | -60.2 | NC_005808.1 | + | 13289 | 0.68 | 0.267069 |
Target: 5'- cAGCGCCgAUUGCAGcgCGccggggCCGGCGUu -3' miRNA: 3'- -UUGCGGgUGGCGUCuaGCa-----GGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33536 | 0.68 | 0.260311 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33584 | 0.68 | 0.260311 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 33626 | 0.68 | 0.260311 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 11157 | 0.68 | 0.253693 |
Target: 5'- cGAUGaCCaCGCCGCAGAUCGU--GGCGUc -3' miRNA: 3'- -UUGC-GG-GUGGCGUCUAGCAggCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 400 | 0.69 | 0.234667 |
Target: 5'- gGGCGCCCACCaGCAgcacggcgguGAUCGU-CGGCc- -3' miRNA: 3'- -UUGCGGGUGG-CGU----------CUAGCAgGCCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 30916 | 0.69 | 0.224427 |
Target: 5'- --aGUCCGCCGCAGucugacaccuuggcaGugguguuUCGUCCGGCGUa -3' miRNA: 3'- uugCGGGUGGCGUC---------------U-------AGCAGGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 28000 | 0.69 | 0.216854 |
Target: 5'- cGACGCaCUGCUgaaaaGCGGAUCGgccgCCGGCAUc -3' miRNA: 3'- -UUGCG-GGUGG-----CGUCUAGCa---GGCCGUA- -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 20438 | 0.7 | 0.200211 |
Target: 5'- uGCGCCaguaGCCGCAGGcccUCGuUCCGGUu- -3' miRNA: 3'- uUGCGGg---UGGCGUCU---AGC-AGGCCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 34828 | 0.71 | 0.170242 |
Target: 5'- gGACGCCgGC-GCAGAUCGcgCCGGUg- -3' miRNA: 3'- -UUGCGGgUGgCGUCUAGCa-GGCCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 24672 | 0.72 | 0.125222 |
Target: 5'- cGCGCCCGCCGCGGGccaCGUCCacgcccaGGCu- -3' miRNA: 3'- uUGCGGGUGGCGUCUa--GCAGG-------CCGua -5' |
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26721 | 3' | -60.2 | NC_005808.1 | + | 5897 | 1.02 | 0.000589 |
Target: 5'- cAACGCCCACCGCAGAUCGUCCGGCAUc -3' miRNA: 3'- -UUGCGGGUGGCGUCUAGCAGGCCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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