Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26724 | 3' | -60.3 | NC_005808.1 | + | 802 | 0.73 | 0.134414 |
Target: 5'- uUCCGGcgacgcGCCGCGCCCA-GCCCUUgcCGAa -3' miRNA: 3'- cGGGCU------CGGCGUGGGUaCGGGAA--GCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 3075 | 1.1 | 0.000196 |
Target: 5'- cGCCCGAGCCGCACCCAUGCCCUUCGAc -3' miRNA: 3'- -CGGGCUCGGCGUGGGUACGGGAAGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 3714 | 0.66 | 0.383214 |
Target: 5'- cGCgCucGUgGCGCCCGUGCCgUUCa- -3' miRNA: 3'- -CGgGcuCGgCGUGGGUACGGgAAGcu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 4877 | 0.66 | 0.365916 |
Target: 5'- cGCCggCGAGCCacGCAaUCAUGCguCCUUCGAu -3' miRNA: 3'- -CGG--GCUCGG--CGUgGGUACG--GGAAGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 6339 | 0.67 | 0.332967 |
Target: 5'- cGCCCcAGCCaaaGCGCCCG-GCCCgaaggcCGGg -3' miRNA: 3'- -CGGGcUCGG---CGUGGGUaCGGGaa----GCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 6404 | 0.66 | 0.383214 |
Target: 5'- gGCCCGguguAGUCGCgGCCCAUGUCgUUgGc -3' miRNA: 3'- -CGGGC----UCGGCG-UGGGUACGGgAAgCu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 8196 | 0.66 | 0.389395 |
Target: 5'- uGCCCGuucgucagcgacauGGCggccaguucgugCGCGgCCGUGCCCUcgUCGGc -3' miRNA: 3'- -CGGGC--------------UCG------------GCGUgGGUACGGGA--AGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 11083 | 0.67 | 0.309717 |
Target: 5'- uGUCCGGGUCGCGCgCGaGCaCCUugUCGGc -3' miRNA: 3'- -CGGGCUCGGCGUGgGUaCG-GGA--AGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 11355 | 0.68 | 0.302247 |
Target: 5'- cGCCCGgcucguagcugGGCCGCGCgCCGggGUUCUUCa- -3' miRNA: 3'- -CGGGC-----------UCGGCGUG-GGUa-CGGGAAGcu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 11837 | 0.66 | 0.374497 |
Target: 5'- -aCCG-GCCGCGCCgCGguugGCCUgggCGAa -3' miRNA: 3'- cgGGCuCGGCGUGG-GUa---CGGGaa-GCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 12614 | 0.66 | 0.365916 |
Target: 5'- gGCCCGuucgacGGCUGCAUCCAgGCCg-UCGu -3' miRNA: 3'- -CGGGC------UCGGCGUGGGUaCGGgaAGCu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 12730 | 0.66 | 0.38146 |
Target: 5'- gGCCCGuuggugcuggguGCCGCGCCCAgacGCUUggCGc -3' miRNA: 3'- -CGGGCu-----------CGGCGUGGGUa--CGGGaaGCu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 12919 | 0.69 | 0.253833 |
Target: 5'- cGCUCG-GCCGCGCCCAUaacgcuagucaGCUUcUCGGg -3' miRNA: 3'- -CGGGCuCGGCGUGGGUA-----------CGGGaAGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 14521 | 0.66 | 0.410158 |
Target: 5'- --aCGAcGCCGCGgCCAccUGCCCgcugUUCGAg -3' miRNA: 3'- cggGCU-CGGCGUgGGU--ACGGG----AAGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 14703 | 0.7 | 0.21757 |
Target: 5'- gGCCUGcAGuuGCGCcuCCAUGCCCUgCGc -3' miRNA: 3'- -CGGGC-UCggCGUG--GGUACGGGAaGCu -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 16331 | 0.69 | 0.233309 |
Target: 5'- uGCgCGAGCCgaccaggccggcggGUGCCCGUGCCUUcggCGAc -3' miRNA: 3'- -CGgGCUCGG--------------CGUGGGUACGGGAa--GCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 17775 | 0.66 | 0.392064 |
Target: 5'- uGCCCGAGCCauugcGCAgCCAgaUGCUgUaCGGc -3' miRNA: 3'- -CGGGCUCGG-----CGUgGGU--ACGGgAaGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 18858 | 0.67 | 0.325077 |
Target: 5'- aGgCCGGGCg--GCCCAUGCCCacgUUCGGg -3' miRNA: 3'- -CgGGCUCGgcgUGGGUACGGG---AAGCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 24426 | 0.66 | 0.401046 |
Target: 5'- gGCCCGAuuugucgguGCCGCGCgCG-GCCUcggCGAc -3' miRNA: 3'- -CGGGCU---------CGGCGUGgGUaCGGGaa-GCU- -5' |
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26724 | 3' | -60.3 | NC_005808.1 | + | 24779 | 0.66 | 0.374497 |
Target: 5'- uGCCaCGGGUCGUcCUCgAUGCCCgcgUUGAa -3' miRNA: 3'- -CGG-GCUCGGCGuGGG-UACGGGa--AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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