miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26724 3' -60.3 NC_005808.1 + 3075 1.1 0.000196
Target:  5'- cGCCCGAGCCGCACCCAUGCCCUUCGAc -3'
miRNA:   3'- -CGGGCUCGGCGUGGGUACGGGAAGCU- -5'
26724 3' -60.3 NC_005808.1 + 802 0.73 0.134414
Target:  5'- uUCCGGcgacgcGCCGCGCCCA-GCCCUUgcCGAa -3'
miRNA:   3'- cGGGCU------CGGCGUGGGUaCGGGAA--GCU- -5'
26724 3' -60.3 NC_005808.1 + 24912 0.71 0.185831
Target:  5'- gGCCCGAGUgGCgcuucgccuacGCCCA-GCCCgcCGAc -3'
miRNA:   3'- -CGGGCUCGgCG-----------UGGGUaCGGGaaGCU- -5'
26724 3' -60.3 NC_005808.1 + 38030 0.71 0.185831
Target:  5'- cGCaCCGAGCaGCGCCUcgGCgaCUUCGGc -3'
miRNA:   3'- -CG-GGCUCGgCGUGGGuaCGg-GAAGCU- -5'
26724 3' -60.3 NC_005808.1 + 40155 0.7 0.21757
Target:  5'- cGCCUGGGCCGCAgUUUcgGCgCCUUCa- -3'
miRNA:   3'- -CGGGCUCGGCGU-GGGuaCG-GGAAGcu -5'
26724 3' -60.3 NC_005808.1 + 14703 0.7 0.21757
Target:  5'- gGCCUGcAGuuGCGCcuCCAUGCCCUgCGc -3'
miRNA:   3'- -CGGGC-UCggCGUG--GGUACGGGAaGCu -5'
26724 3' -60.3 NC_005808.1 + 16331 0.69 0.233309
Target:  5'- uGCgCGAGCCgaccaggccggcggGUGCCCGUGCCUUcggCGAc -3'
miRNA:   3'- -CGgGCUCGG--------------CGUGGGUACGGGAa--GCU- -5'
26724 3' -60.3 NC_005808.1 + 12919 0.69 0.253833
Target:  5'- cGCUCG-GCCGCGCCCAUaacgcuagucaGCUUcUCGGg -3'
miRNA:   3'- -CGGGCuCGGCGUGGGUA-----------CGGGaAGCU- -5'
26724 3' -60.3 NC_005808.1 + 11355 0.68 0.302247
Target:  5'- cGCCCGgcucguagcugGGCCGCGCgCCGggGUUCUUCa- -3'
miRNA:   3'- -CGGGC-----------UCGGCGUG-GGUa-CGGGAAGcu -5'
26724 3' -60.3 NC_005808.1 + 11083 0.67 0.309717
Target:  5'- uGUCCGGGUCGCGCgCGaGCaCCUugUCGGc -3'
miRNA:   3'- -CGGGCUCGGCGUGgGUaCG-GGA--AGCU- -5'
26724 3' -60.3 NC_005808.1 + 32115 0.67 0.325077
Target:  5'- cGCCCuGGCCGCugCCGaccucgacGCCCc-CGAa -3'
miRNA:   3'- -CGGGcUCGGCGugGGUa-------CGGGaaGCU- -5'
26724 3' -60.3 NC_005808.1 + 18858 0.67 0.325077
Target:  5'- aGgCCGGGCg--GCCCAUGCCCacgUUCGGg -3'
miRNA:   3'- -CgGGCUCGgcgUGGGUACGGG---AAGCU- -5'
26724 3' -60.3 NC_005808.1 + 39869 0.67 0.332967
Target:  5'- aGCgCCGGGCCGCGCUCAagcGUCCg---- -3'
miRNA:   3'- -CG-GGCUCGGCGUGGGUa--CGGGaagcu -5'
26724 3' -60.3 NC_005808.1 + 6339 0.67 0.332967
Target:  5'- cGCCCcAGCCaaaGCGCCCG-GCCCgaaggcCGGg -3'
miRNA:   3'- -CGGGcUCGG---CGUGGGUaCGGGaa----GCU- -5'
26724 3' -60.3 NC_005808.1 + 32625 0.67 0.332967
Target:  5'- gGCCgCGAcGCCGCGgUCGcUGUCCUgUCGAa -3'
miRNA:   3'- -CGG-GCU-CGGCGUgGGU-ACGGGA-AGCU- -5'
26724 3' -60.3 NC_005808.1 + 42146 0.66 0.357472
Target:  5'- cGCCCGcaagcuGGCCGCGCagCA-GCCCaaCGAc -3'
miRNA:   3'- -CGGGC------UCGGCGUGg-GUaCGGGaaGCU- -5'
26724 3' -60.3 NC_005808.1 + 40887 0.66 0.357472
Target:  5'- cGCCCucGCCgGCACgCcgGCCCacggCGAa -3'
miRNA:   3'- -CGGGcuCGG-CGUGgGuaCGGGaa--GCU- -5'
26724 3' -60.3 NC_005808.1 + 26046 0.66 0.357472
Target:  5'- aGCCCGcgcggcGGgCGCGCuCCAUGCgCUcggCGAa -3'
miRNA:   3'- -CGGGC------UCgGCGUG-GGUACGgGAa--GCU- -5'
26724 3' -60.3 NC_005808.1 + 4877 0.66 0.365916
Target:  5'- cGCCggCGAGCCacGCAaUCAUGCguCCUUCGAu -3'
miRNA:   3'- -CGG--GCUCGG--CGUgGGUACG--GGAAGCU- -5'
26724 3' -60.3 NC_005808.1 + 12614 0.66 0.365916
Target:  5'- gGCCCGuucgacGGCUGCAUCCAgGCCg-UCGu -3'
miRNA:   3'- -CGGGC------UCGGCGUGGGUaCGGgaAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.