miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26724 3' -60.3 NC_005808.1 + 32506 0.66 0.410158
Target:  5'- aGgCCGAGaacuCCGCGCCCGUGCaggCUggUGAu -3'
miRNA:   3'- -CgGGCUC----GGCGUGGGUACGg--GAa-GCU- -5'
26724 3' -60.3 NC_005808.1 + 14521 0.66 0.410158
Target:  5'- --aCGAcGCCGCGgCCAccUGCCCgcugUUCGAg -3'
miRNA:   3'- cggGCU-CGGCGUgGGU--ACGGG----AAGCU- -5'
26724 3' -60.3 NC_005808.1 + 24426 0.66 0.401046
Target:  5'- gGCCCGAuuugucgguGCCGCGCgCG-GCCUcggCGAc -3'
miRNA:   3'- -CGGGCU---------CGGCGUGgGUaCGGGaa-GCU- -5'
26724 3' -60.3 NC_005808.1 + 31184 0.66 0.401046
Target:  5'- aGCaCGGGCCGCGCaCGuucUGCCUgacggUCGAg -3'
miRNA:   3'- -CGgGCUCGGCGUGgGU---ACGGGa----AGCU- -5'
26724 3' -60.3 NC_005808.1 + 17775 0.66 0.392064
Target:  5'- uGCCCGAGCCauugcGCAgCCAgaUGCUgUaCGGc -3'
miRNA:   3'- -CGGGCUCGG-----CGUgGGU--ACGGgAaGCU- -5'
26724 3' -60.3 NC_005808.1 + 8196 0.66 0.389395
Target:  5'- uGCCCGuucgucagcgacauGGCggccaguucgugCGCGgCCGUGCCCUcgUCGGc -3'
miRNA:   3'- -CGGGC--------------UCG------------GCGUgGGUACGGGA--AGCU- -5'
26724 3' -60.3 NC_005808.1 + 6404 0.66 0.383214
Target:  5'- gGCCCGguguAGUCGCgGCCCAUGUCgUUgGc -3'
miRNA:   3'- -CGGGC----UCGGCG-UGGGUACGGgAAgCu -5'
26724 3' -60.3 NC_005808.1 + 3714 0.66 0.383214
Target:  5'- cGCgCucGUgGCGCCCGUGCCgUUCa- -3'
miRNA:   3'- -CGgGcuCGgCGUGGGUACGGgAAGcu -5'
26724 3' -60.3 NC_005808.1 + 12730 0.66 0.38146
Target:  5'- gGCCCGuuggugcuggguGCCGCGCCCAgacGCUUggCGc -3'
miRNA:   3'- -CGGGCu-----------CGGCGUGGGUa--CGGGaaGCu -5'
26724 3' -60.3 NC_005808.1 + 24779 0.66 0.374497
Target:  5'- uGCCaCGGGUCGUcCUCgAUGCCCgcgUUGAa -3'
miRNA:   3'- -CGG-GCUCGGCGuGGG-UACGGGa--AGCU- -5'
26724 3' -60.3 NC_005808.1 + 11837 0.66 0.374497
Target:  5'- -aCCG-GCCGCGCCgCGguugGCCUgggCGAa -3'
miRNA:   3'- cgGGCuCGGCGUGG-GUa---CGGGaa-GCU- -5'
26724 3' -60.3 NC_005808.1 + 4877 0.66 0.365916
Target:  5'- cGCCggCGAGCCacGCAaUCAUGCguCCUUCGAu -3'
miRNA:   3'- -CGG--GCUCGG--CGUgGGUACG--GGAAGCU- -5'
26724 3' -60.3 NC_005808.1 + 12614 0.66 0.365916
Target:  5'- gGCCCGuucgacGGCUGCAUCCAgGCCg-UCGu -3'
miRNA:   3'- -CGGGC------UCGGCGUGGGUaCGGgaAGCu -5'
26724 3' -60.3 NC_005808.1 + 26046 0.66 0.357472
Target:  5'- aGCCCGcgcggcGGgCGCGCuCCAUGCgCUcggCGAa -3'
miRNA:   3'- -CGGGC------UCgGCGUG-GGUACGgGAa--GCU- -5'
26724 3' -60.3 NC_005808.1 + 42146 0.66 0.357472
Target:  5'- cGCCCGcaagcuGGCCGCGCagCA-GCCCaaCGAc -3'
miRNA:   3'- -CGGGC------UCGGCGUGg-GUaCGGGaaGCU- -5'
26724 3' -60.3 NC_005808.1 + 40887 0.66 0.357472
Target:  5'- cGCCCucGCCgGCACgCcgGCCCacggCGAa -3'
miRNA:   3'- -CGGGcuCGG-CGUGgGuaCGGGaa--GCU- -5'
26724 3' -60.3 NC_005808.1 + 32625 0.67 0.332967
Target:  5'- gGCCgCGAcGCCGCGgUCGcUGUCCUgUCGAa -3'
miRNA:   3'- -CGG-GCU-CGGCGUgGGU-ACGGGA-AGCU- -5'
26724 3' -60.3 NC_005808.1 + 39869 0.67 0.332967
Target:  5'- aGCgCCGGGCCGCGCUCAagcGUCCg---- -3'
miRNA:   3'- -CG-GGCUCGGCGUGGGUa--CGGGaagcu -5'
26724 3' -60.3 NC_005808.1 + 6339 0.67 0.332967
Target:  5'- cGCCCcAGCCaaaGCGCCCG-GCCCgaaggcCGGg -3'
miRNA:   3'- -CGGGcUCGG---CGUGGGUaCGGGaa----GCU- -5'
26724 3' -60.3 NC_005808.1 + 32115 0.67 0.325077
Target:  5'- cGCCCuGGCCGCugCCGaccucgacGCCCc-CGAa -3'
miRNA:   3'- -CGGGcUCGGCGugGGUa-------CGGGaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.