miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26726 3' -54.1 NC_005808.1 + 41305 0.66 0.720407
Target:  5'- cCCUgGGCGcgGCGGUGuGGgcgggCAucaccucgaaacuugGGGGCCa -3'
miRNA:   3'- -GGAgCCGC--UGCUAC-CUaa---GU---------------UCCCGG- -5'
26726 3' -54.1 NC_005808.1 + 39653 0.66 0.758578
Target:  5'- uUCUCGcGCuGCGAacUGGAa-CAAcGGGCCg -3'
miRNA:   3'- -GGAGC-CGcUGCU--ACCUaaGUU-CCCGG- -5'
26726 3' -54.1 NC_005808.1 + 36456 0.69 0.561327
Target:  5'- --aCGGCGGCGAgUGGGUgcugauggAAGGGCa -3'
miRNA:   3'- ggaGCCGCUGCU-ACCUAag------UUCCCGg -5'
26726 3' -54.1 NC_005808.1 + 34693 0.7 0.507481
Target:  5'- cCCUCGGCaa-GAUGGGaggcaAAGGGCa -3'
miRNA:   3'- -GGAGCCGcugCUACCUaag--UUCCCGg -5'
26726 3' -54.1 NC_005808.1 + 33763 0.68 0.650022
Target:  5'- aCgUCGGCGAgGAcGGuaUCAA-GGCCg -3'
miRNA:   3'- -GgAGCCGCUgCUaCCuaAGUUcCCGG- -5'
26726 3' -54.1 NC_005808.1 + 33162 0.66 0.748124
Target:  5'- -gUgGGCGAUGGUGGAguugCGGaaguGGGCg -3'
miRNA:   3'- ggAgCCGCUGCUACCUaa--GUU----CCCGg -5'
26726 3' -54.1 NC_005808.1 + 33155 0.68 0.635546
Target:  5'- cCCUCGGCGugGAcGcGAccaacgacgcuaUUCAAGaccugcaagcccgcGGCCu -3'
miRNA:   3'- -GGAGCCGCugCUaC-CU------------AAGUUC--------------CCGG- -5'
26726 3' -54.1 NC_005808.1 + 31027 0.67 0.683278
Target:  5'- cCCUgGGCGGC-AUGGcUUCGAugaccggcGGGCa -3'
miRNA:   3'- -GGAgCCGCUGcUACCuAAGUU--------CCCGg -5'
26726 3' -54.1 NC_005808.1 + 30420 0.7 0.528786
Target:  5'- gCUCGGCauGGCGAUGagcgCGggcAGGGCCu -3'
miRNA:   3'- gGAGCCG--CUGCUACcuaaGU---UCCCGG- -5'
26726 3' -54.1 NC_005808.1 + 29967 0.66 0.736485
Target:  5'- gUCgCGGCGcACGAcggccUGGAUgcagccgUCGAacGGGCCa -3'
miRNA:   3'- -GGaGCCGC-UGCU-----ACCUA-------AGUU--CCCGG- -5'
26726 3' -54.1 NC_005808.1 + 28053 0.7 0.49592
Target:  5'- aCgUCGGCGACGGUcugcucgaacagcGGg--CAGGuGGCCg -3'
miRNA:   3'- -GgAGCCGCUGCUA-------------CCuaaGUUC-CCGG- -5'
26726 3' -54.1 NC_005808.1 + 26187 0.71 0.455949
Target:  5'- uUUCGGUGGCGAUGGcUUCGGuguaGGUCg -3'
miRNA:   3'- gGAGCCGCUGCUACCuAAGUUc---CCGG- -5'
26726 3' -54.1 NC_005808.1 + 25988 0.72 0.387954
Target:  5'- uCCUCGccggucuGCGGCGuauUGGcgauUUCGAGGGCUu -3'
miRNA:   3'- -GGAGC-------CGCUGCu--ACCu---AAGUUCCCGG- -5'
26726 3' -54.1 NC_005808.1 + 23783 0.68 0.638888
Target:  5'- gCCgCGGCuACGAagaUGGAUUCcguGGuGCCg -3'
miRNA:   3'- -GGaGCCGcUGCU---ACCUAAGuu-CC-CGG- -5'
26726 3' -54.1 NC_005808.1 + 22247 0.71 0.426415
Target:  5'- -gUCGGCcGCGAUGGcguAUUCGccGGCCg -3'
miRNA:   3'- ggAGCCGcUGCUACC---UAAGUucCCGG- -5'
26726 3' -54.1 NC_005808.1 + 20092 0.67 0.705218
Target:  5'- uCCUUGGCGACuucGGAa--AAGGcGCCc -3'
miRNA:   3'- -GGAGCCGCUGcuaCCUaagUUCC-CGG- -5'
26726 3' -54.1 NC_005808.1 + 17919 0.66 0.726864
Target:  5'- gCCUgGGCGugGAcgUGGcccgCGGcGGGCg -3'
miRNA:   3'- -GGAgCCGCugCU--ACCuaa-GUU-CCCGg -5'
26726 3' -54.1 NC_005808.1 + 17281 0.73 0.37092
Target:  5'- uCC-CGGCGACGAgcgccGGuggC-AGGGCCg -3'
miRNA:   3'- -GGaGCCGCUGCUa----CCuaaGuUCCCGG- -5'
26726 3' -54.1 NC_005808.1 + 15192 0.66 0.755455
Target:  5'- gCCaggCGcGCGACGAcuacaagagcgacaUGGAUUUGcuGGCCg -3'
miRNA:   3'- -GGa--GC-CGCUGCU--------------ACCUAAGUucCCGG- -5'
26726 3' -54.1 NC_005808.1 + 14815 0.67 0.672228
Target:  5'- aCCUCGGCGGCGcUGccUUCGcccAGGucgauGCCg -3'
miRNA:   3'- -GGAGCCGCUGCuACcuAAGU---UCC-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.