miRNA display CGI


Results 21 - 23 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26727 3' -51.5 NC_005808.1 + 16321 0.74 0.391879
Target:  5'- aGCGAGUacgaCAUGGCCGAUUCGgugCCAc- -3'
miRNA:   3'- cCGCUCG----GUACUGGUUAAGCa--GGUag -5'
26727 3' -51.5 NC_005808.1 + 40852 0.76 0.321047
Target:  5'- aGGCcGGCCAUGACCGcccggUGUUCAUCu -3'
miRNA:   3'- -CCGcUCGGUACUGGUuaa--GCAGGUAG- -5'
26727 3' -51.5 NC_005808.1 + 1693 1.14 0.000838
Target:  5'- cGGCGAGCCAUGACCAAUUCGUCCAUCg -3'
miRNA:   3'- -CCGCUCGGUACUGGUUAAGCAGGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.