Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26729 | 3' | -59.2 | NC_005808.1 | + | 7710 | 0.67 | 0.33995 |
Target: 5'- cGGCUugccgaugaacUGCAGCgCACgcucGGCgGCC-GGCu -3' miRNA: 3'- -UCGA-----------ACGUCG-GUGaa--CCGgCGGaCCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 34359 | 0.66 | 0.365483 |
Target: 5'- cGCUUGaagcgcaAGCUGCUgacGGCCGCCgaccaGCg -3' miRNA: 3'- uCGAACg------UCGGUGAa--CCGGCGGac---CG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 12404 | 0.68 | 0.271272 |
Target: 5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3' miRNA: 3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 32812 | 0.67 | 0.33995 |
Target: 5'- cGGCgUGC-GCgACcUGGCCGCgUGGa -3' miRNA: 3'- -UCGaACGuCGgUGaACCGGCGgACCg -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 10157 | 0.67 | 0.356827 |
Target: 5'- gGGCguagggGCAGUCGCUgccGUCGUCUuGGCa -3' miRNA: 3'- -UCGaa----CGUCGGUGAac-CGGCGGA-CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 39741 | 0.66 | 0.383226 |
Target: 5'- uGGCUcUGCcaacGCUacgGCUUGGCgGgCUGGCc -3' miRNA: 3'- -UCGA-ACGu---CGG---UGAACCGgCgGACCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 5688 | 0.67 | 0.32366 |
Target: 5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3' miRNA: 3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 41622 | 0.67 | 0.355969 |
Target: 5'- cGGCcagGCGGCCAagUGGCUgcaagcuGCCgugGGCa -3' miRNA: 3'- -UCGaa-CGUCGGUgaACCGG-------CGGa--CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 9985 | 0.67 | 0.348316 |
Target: 5'- cGGCgucGCGGCCcuugACgcgGGCCaGCUUGGUc -3' miRNA: 3'- -UCGaa-CGUCGG----UGaa-CCGG-CGGACCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 19028 | 0.69 | 0.238182 |
Target: 5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3' miRNA: 3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 37445 | 0.73 | 0.12336 |
Target: 5'- gGGCgugaGCAGCgAC--GGCCGCCUGcGCg -3' miRNA: 3'- -UCGaa--CGUCGgUGaaCCGGCGGAC-CG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 9210 | 0.66 | 0.374283 |
Target: 5'- cGGCggcGCGGCgCACguucugcGGCgCGCCcGGCg -3' miRNA: 3'- -UCGaa-CGUCG-GUGaa-----CCG-GCGGaCCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 11578 | 0.72 | 0.162732 |
Target: 5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3' miRNA: 3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 18065 | 0.66 | 0.392309 |
Target: 5'- cGGCgcggGguGCgUGCUgGGCCGCCgaagccGGCg -3' miRNA: 3'- -UCGaa--CguCG-GUGAaCCGGCGGa-----CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 9385 | 0.71 | 0.166824 |
Target: 5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3' miRNA: 3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 36211 | 0.66 | 0.392309 |
Target: 5'- cGaggGC-GCCGCggcGGCCGaCCUGGUg -3' miRNA: 3'- uCgaaCGuCGGUGaa-CCGGC-GGACCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 33928 | 0.66 | 0.411834 |
Target: 5'- gGGCgcgcaGCAGCCGCUgcacacagcgaguacGGCgCGgCCUGGg -3' miRNA: 3'- -UCGaa---CGUCGGUGAa--------------CCG-GC-GGACCg -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 25744 | 0.68 | 0.271272 |
Target: 5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3' miRNA: 3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 6771 | 0.69 | 0.250995 |
Target: 5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3' miRNA: 3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5' |
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26729 | 3' | -59.2 | NC_005808.1 | + | 39758 | 0.7 | 0.219994 |
Target: 5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3' miRNA: 3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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