miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 3' -56.7 NC_005808.1 + 39854 0.71 0.294187
Target:  5'- uCGGCACGcCCgaGCAgcgccgggCCGCGCUCAAGc -3'
miRNA:   3'- -GCCGUGCaGG--UGUa-------GGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 39706 0.66 0.554954
Target:  5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3'
miRNA:   3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5'
26730 3' -56.7 NC_005808.1 + 38887 0.66 0.573482
Target:  5'- aCGGCACGggcgCCACGagCGCGUggaacaucuucaguCCAAGu -3'
miRNA:   3'- -GCCGUGCa---GGUGUagGUGCG--------------GGUUCu -5'
26730 3' -56.7 NC_005808.1 + 38830 0.67 0.533389
Target:  5'- uCGGCACGaCCGaggCUACGUCCAGc- -3'
miRNA:   3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 38068 0.67 0.528044
Target:  5'- gCGGCACGaccgcccagcacgCCACGUUCAcgggcgcCGCCCGugAGAu -3'
miRNA:   3'- -GCCGUGCa------------GGUGUAGGU-------GCGGGU--UCU- -5'
26730 3' -56.7 NC_005808.1 + 37172 0.67 0.512131
Target:  5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3'
miRNA:   3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5'
26730 3' -56.7 NC_005808.1 + 33670 0.66 0.554954
Target:  5'- cCGGCACGgCCACcgCUgGCGaauCCGAGAa -3'
miRNA:   3'- -GCCGUGCaGGUGuaGG-UGCg--GGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 33381 0.68 0.431106
Target:  5'- gGGCGCG-CCGCAgaacgugcgCCGCGCcgCCGAGc -3'
miRNA:   3'- gCCGUGCaGGUGUa--------GGUGCG--GGUUCu -5'
26730 3' -56.7 NC_005808.1 + 33093 0.7 0.349593
Target:  5'- gCGGCG-GcCUACAUCCuCGCCCAuGAa -3'
miRNA:   3'- -GCCGUgCaGGUGUAGGuGCGGGUuCU- -5'
26730 3' -56.7 NC_005808.1 + 32990 0.66 0.587747
Target:  5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3'
miRNA:   3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 32329 0.71 0.317057
Target:  5'- aGGCcgGCGUCCcgACAaCCGcCGCCCAGGu -3'
miRNA:   3'- gCCG--UGCAGG--UGUaGGU-GCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 32013 0.69 0.384438
Target:  5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3'
miRNA:   3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 30317 0.73 0.221329
Target:  5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3'
miRNA:   3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 29652 0.7 0.349593
Target:  5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3'
miRNA:   3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 29570 0.67 0.480929
Target:  5'- gGGUaucGCGUCagguCggCCGCGCCCAGGc -3'
miRNA:   3'- gCCG---UGCAGgu--GuaGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 29419 0.71 0.294187
Target:  5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3'
miRNA:   3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 29122 0.72 0.258964
Target:  5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3'
miRNA:   3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 28622 0.66 0.551702
Target:  5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3'
miRNA:   3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 28201 0.67 0.522718
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5'
26730 3' -56.7 NC_005808.1 + 28187 0.67 0.480929
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.