miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 3' -56.7 NC_005808.1 + 13510 0.7 0.35809
Target:  5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3'
miRNA:   3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 13652 0.68 0.457647
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26730 3' -56.7 NC_005808.1 + 13978 0.71 0.294187
Target:  5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3'
miRNA:   3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 15381 0.68 0.46065
Target:  5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3'
miRNA:   3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5'
26730 3' -56.7 NC_005808.1 + 15539 0.67 0.501633
Target:  5'- -uGCACGgugCCgGCcUCCACGUCCAGGu -3'
miRNA:   3'- gcCGUGCa--GG-UGuAGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 18325 0.7 0.35809
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 18846 0.67 0.53768
Target:  5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3'
miRNA:   3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 20845 0.68 0.431106
Target:  5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3'
miRNA:   3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 21146 0.67 0.522718
Target:  5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3'
miRNA:   3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5'
26730 3' -56.7 NC_005808.1 + 21747 0.73 0.20986
Target:  5'- gGGCGCGgCCGCGUCCAcauaggacaggcCGCCCGGc- -3'
miRNA:   3'- gCCGUGCaGGUGUAGGU------------GCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 23250 0.66 0.554954
Target:  5'- aCGGCAauUCCGCcgCCugGCGCCUguccgAAGAc -3'
miRNA:   3'- -GCCGUgcAGGUGuaGG--UGCGGG-----UUCU- -5'
26730 3' -56.7 NC_005808.1 + 23334 0.67 0.512131
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 24096 0.68 0.470734
Target:  5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3'
miRNA:   3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 24498 0.7 0.341241
Target:  5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3'
miRNA:   3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5'
26730 3' -56.7 NC_005808.1 + 24677 0.81 0.062488
Target:  5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3'
miRNA:   3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 25372 0.69 0.412039
Target:  5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3'
miRNA:   3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5'
26730 3' -56.7 NC_005808.1 + 27842 0.7 0.366731
Target:  5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3'
miRNA:   3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 28187 0.67 0.480929
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 28201 0.67 0.522718
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5'
26730 3' -56.7 NC_005808.1 + 28622 0.66 0.551702
Target:  5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3'
miRNA:   3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.