miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 3' -56.7 NC_005808.1 + 8496 0.77 0.121008
Target:  5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3'
miRNA:   3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5'
26730 3' -56.7 NC_005808.1 + 24677 0.81 0.062488
Target:  5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3'
miRNA:   3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 5531 0.68 0.421507
Target:  5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3'
miRNA:   3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 13652 0.68 0.457647
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26730 3' -56.7 NC_005808.1 + 4773 0.68 0.46065
Target:  5'- uCGGCGuuCGcCCACA-CUGCGCCCAGc- -3'
miRNA:   3'- -GCCGU--GCaGGUGUaGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 18846 0.67 0.53768
Target:  5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3'
miRNA:   3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 1461 0.67 0.522718
Target:  5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3'
miRNA:   3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 21146 0.67 0.522718
Target:  5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3'
miRNA:   3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5'
26730 3' -56.7 NC_005808.1 + 1113 0.67 0.522718
Target:  5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3'
miRNA:   3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 28201 0.67 0.522718
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5'
26730 3' -56.7 NC_005808.1 + 37172 0.67 0.512131
Target:  5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3'
miRNA:   3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5'
26730 3' -56.7 NC_005808.1 + 7772 0.67 0.49123
Target:  5'- cCGGCGCGaUCUgcgccgGCGUCCAcccuucgcCGCCCAgcAGGc -3'
miRNA:   3'- -GCCGUGC-AGG------UGUAGGU--------GCGGGU--UCU- -5'
26730 3' -56.7 NC_005808.1 + 29570 0.67 0.480929
Target:  5'- gGGUaucGCGUCagguCggCCGCGCCCAGGc -3'
miRNA:   3'- gCCG---UGCAGgu--GuaGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 10531 0.68 0.470734
Target:  5'- cCGGcCACGcuuUCCGCcgCCACGCgCAAcGGg -3'
miRNA:   3'- -GCC-GUGC---AGGUGuaGGUGCGgGUU-CU- -5'
26730 3' -56.7 NC_005808.1 + 24096 0.68 0.470734
Target:  5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3'
miRNA:   3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 15381 0.68 0.46065
Target:  5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3'
miRNA:   3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5'
26730 3' -56.7 NC_005808.1 + 1417 1.09 0.000554
Target:  5'- cCGGCACGUCCACAUCCACGCCCAAGAu -3'
miRNA:   3'- -GCCGUGCAGGUGUAGGUGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.