miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 3' -56.7 NC_005808.1 + 28622 0.66 0.551702
Target:  5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3'
miRNA:   3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 23250 0.66 0.554954
Target:  5'- aCGGCAauUCCGCcgCCugGCGCCUguccgAAGAc -3'
miRNA:   3'- -GCCGUgcAGGUGuaGG--UGCGGG-----UUCU- -5'
26730 3' -56.7 NC_005808.1 + 39706 0.66 0.554954
Target:  5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3'
miRNA:   3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5'
26730 3' -56.7 NC_005808.1 + 5010 0.66 0.565833
Target:  5'- uCGGCGCaGUCCGCuUUCAgCGCCgCGAu- -3'
miRNA:   3'- -GCCGUG-CAGGUGuAGGU-GCGG-GUUcu -5'
26730 3' -56.7 NC_005808.1 + 38887 0.66 0.573482
Target:  5'- aCGGCACGggcgCCACGagCGCGUggaacaucuucaguCCAAGu -3'
miRNA:   3'- -GCCGUGCa---GGUGUagGUGCG--------------GGUUCu -5'
26730 3' -56.7 NC_005808.1 + 33670 0.66 0.554954
Target:  5'- cCGGCACGgCCACcgCUgGCGaauCCGAGAa -3'
miRNA:   3'- -GCCGUGCaGGUGuaGG-UGCg--GGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 9212 0.66 0.576767
Target:  5'- gCGGCGCGgCgCACGUUCugcggcGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGCaG-GUGUAGG------UGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 11214 0.66 0.565833
Target:  5'- cCGcGCAUGaccgCCACGUucccgcCCACGCCCAc-- -3'
miRNA:   3'- -GC-CGUGCa---GGUGUA------GGUGCGGGUucu -5'
26730 3' -56.7 NC_005808.1 + 8053 0.66 0.565833
Target:  5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3'
miRNA:   3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 13652 0.68 0.457647
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26730 3' -56.7 NC_005808.1 + 24677 0.81 0.062488
Target:  5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3'
miRNA:   3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 8496 0.77 0.121008
Target:  5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3'
miRNA:   3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5'
26730 3' -56.7 NC_005808.1 + 21747 0.73 0.20986
Target:  5'- gGGCGCGgCCGCGUCCAcauaggacaggcCGCCCGGc- -3'
miRNA:   3'- gCCGUGCaGGUGUAGGU------------GCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 357 0.72 0.252347
Target:  5'- aGGC-CGUCCg---CCAgGCCCGAGAa -3'
miRNA:   3'- gCCGuGCAGGuguaGGUgCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 1291 0.71 0.279667
Target:  5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3'
miRNA:   3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 29419 0.71 0.294187
Target:  5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3'
miRNA:   3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 39854 0.71 0.294187
Target:  5'- uCGGCACGcCCgaGCAgcgccgggCCGCGCUCAAGc -3'
miRNA:   3'- -GCCGUGCaGG--UGUa-------GGUGCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 32329 0.71 0.317057
Target:  5'- aGGCcgGCGUCCcgACAaCCGcCGCCCAGGu -3'
miRNA:   3'- gCCG--UGCAGG--UGUaGGU-GCGGGUUCu -5'
26730 3' -56.7 NC_005808.1 + 33093 0.7 0.349593
Target:  5'- gCGGCG-GcCUACAUCCuCGCCCAuGAa -3'
miRNA:   3'- -GCCGUgCaGGUGUAGGuGCGGGUuCU- -5'
26730 3' -56.7 NC_005808.1 + 9444 0.7 0.35809
Target:  5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3'
miRNA:   3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.