Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26730 | 3' | -56.7 | NC_005808.1 | + | 38887 | 0.66 | 0.573482 |
Target: 5'- aCGGCACGggcgCCACGagCGCGUggaacaucuucaguCCAAGu -3' miRNA: 3'- -GCCGUGCa---GGUGUagGUGCG--------------GGUUCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 28622 | 0.66 | 0.551702 |
Target: 5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3' miRNA: 3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 6328 | 0.68 | 0.421507 |
Target: 5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3' miRNA: 3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 25372 | 0.69 | 0.412039 |
Target: 5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3' miRNA: 3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 13181 | 0.69 | 0.412039 |
Target: 5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3' miRNA: 3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 29419 | 0.71 | 0.294187 |
Target: 5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3' miRNA: 3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 8496 | 0.77 | 0.121008 |
Target: 5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3' miRNA: 3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 8053 | 0.66 | 0.565833 |
Target: 5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3' miRNA: 3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 33670 | 0.66 | 0.554954 |
Target: 5'- cCGGCACGgCCACcgCUgGCGaauCCGAGAa -3' miRNA: 3'- -GCCGUGCaGGUGuaGG-UGCg--GGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 18846 | 0.67 | 0.53768 |
Target: 5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3' miRNA: 3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 13652 | 0.68 | 0.457647 |
Target: 5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3' miRNA: 3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 5531 | 0.68 | 0.421507 |
Target: 5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3' miRNA: 3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 6879 | 0.69 | 0.375514 |
Target: 5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3' miRNA: 3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 27842 | 0.7 | 0.366731 |
Target: 5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3' miRNA: 3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 1291 | 0.71 | 0.279667 |
Target: 5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3' miRNA: 3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 37172 | 0.67 | 0.512131 |
Target: 5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3' miRNA: 3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 28201 | 0.67 | 0.522718 |
Target: 5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3' miRNA: 3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 1113 | 0.67 | 0.522718 |
Target: 5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3' miRNA: 3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 21146 | 0.67 | 0.522718 |
Target: 5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3' miRNA: 3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 1461 | 0.67 | 0.522718 |
Target: 5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3' miRNA: 3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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