Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26730 | 3' | -56.7 | NC_005808.1 | + | 5362 | 0.74 | 0.20432 |
Target: 5'- uGGC-CGcCUGCA-CCGCGCCCAGGGu -3' miRNA: 3'- gCCGuGCaGGUGUaGGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 38068 | 0.67 | 0.528044 |
Target: 5'- gCGGCACGaccgcccagcacgCCACGUUCAcgggcgcCGCCCGugAGAu -3' miRNA: 3'- -GCCGUGCa------------GGUGUAGGU-------GCGGGU--UCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 28622 | 0.66 | 0.551702 |
Target: 5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3' miRNA: 3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 32990 | 0.66 | 0.587747 |
Target: 5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3' miRNA: 3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 24498 | 0.7 | 0.341241 |
Target: 5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3' miRNA: 3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 29652 | 0.7 | 0.349593 |
Target: 5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3' miRNA: 3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 13510 | 0.7 | 0.35809 |
Target: 5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3' miRNA: 3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 32013 | 0.69 | 0.384438 |
Target: 5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3' miRNA: 3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 6328 | 0.68 | 0.421507 |
Target: 5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3' miRNA: 3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 23334 | 0.67 | 0.512131 |
Target: 5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3' miRNA: 3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 20845 | 0.68 | 0.431106 |
Target: 5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3' miRNA: 3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 25372 | 0.69 | 0.412039 |
Target: 5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3' miRNA: 3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 30317 | 0.73 | 0.221329 |
Target: 5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3' miRNA: 3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 11616 | 0.68 | 0.470734 |
Target: 5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3' miRNA: 3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 29122 | 0.72 | 0.258964 |
Target: 5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3' miRNA: 3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 13181 | 0.69 | 0.412039 |
Target: 5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3' miRNA: 3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 28187 | 0.67 | 0.480929 |
Target: 5'- aGGCGCG-CCugG-CgACGCCCAGc- -3' miRNA: 3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 38830 | 0.67 | 0.533389 |
Target: 5'- uCGGCACGaCCGaggCUACGUCCAGc- -3' miRNA: 3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 13978 | 0.71 | 0.294187 |
Target: 5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3' miRNA: 3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5' |
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26730 | 3' | -56.7 | NC_005808.1 | + | 18325 | 0.7 | 0.35809 |
Target: 5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3' miRNA: 3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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