miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 3' -56.7 NC_005808.1 + 5362 0.74 0.20432
Target:  5'- uGGC-CGcCUGCA-CCGCGCCCAGGGu -3'
miRNA:   3'- gCCGuGCaGGUGUaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 38068 0.67 0.528044
Target:  5'- gCGGCACGaccgcccagcacgCCACGUUCAcgggcgcCGCCCGugAGAu -3'
miRNA:   3'- -GCCGUGCa------------GGUGUAGGU-------GCGGGU--UCU- -5'
26730 3' -56.7 NC_005808.1 + 28622 0.66 0.551702
Target:  5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3'
miRNA:   3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 32990 0.66 0.587747
Target:  5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3'
miRNA:   3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 24498 0.7 0.341241
Target:  5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3'
miRNA:   3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5'
26730 3' -56.7 NC_005808.1 + 29652 0.7 0.349593
Target:  5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3'
miRNA:   3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 13510 0.7 0.35809
Target:  5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3'
miRNA:   3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 32013 0.69 0.384438
Target:  5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3'
miRNA:   3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 6328 0.68 0.421507
Target:  5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 23334 0.67 0.512131
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 20845 0.68 0.431106
Target:  5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3'
miRNA:   3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 25372 0.69 0.412039
Target:  5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3'
miRNA:   3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5'
26730 3' -56.7 NC_005808.1 + 30317 0.73 0.221329
Target:  5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3'
miRNA:   3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 11616 0.68 0.470734
Target:  5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3'
miRNA:   3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5'
26730 3' -56.7 NC_005808.1 + 29122 0.72 0.258964
Target:  5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3'
miRNA:   3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 13181 0.69 0.412039
Target:  5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3'
miRNA:   3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5'
26730 3' -56.7 NC_005808.1 + 28187 0.67 0.480929
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 38830 0.67 0.533389
Target:  5'- uCGGCACGaCCGaggCUACGUCCAGc- -3'
miRNA:   3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 13978 0.71 0.294187
Target:  5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3'
miRNA:   3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5'
26730 3' -56.7 NC_005808.1 + 18325 0.7 0.35809
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.