miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 5' -60 NC_005808.1 + 41908 0.67 0.347585
Target:  5'- -aUCUUGGgcgcccggcCGGCGCcgccGUaGGCGGCCUg -3'
miRNA:   3'- gaAGAACU---------GCCGCGc---CAgCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 40460 0.69 0.272399
Target:  5'- -----cGGCGGCGCGGUUGacCGGCUg -3'
miRNA:   3'- gaagaaCUGCCGCGCCAGCc-GCCGGa -5'
26730 5' -60 NC_005808.1 + 39043 0.72 0.166055
Target:  5'- -aUUUauGCGGCGCGGUUGGCGGgaCUg -3'
miRNA:   3'- gaAGAacUGCCGCGCCAGCCGCCg-GA- -5'
26730 5' -60 NC_005808.1 + 38438 0.66 0.408442
Target:  5'- -cUCgaccACGGCGCgcaaGGUgGGCGGCUUc -3'
miRNA:   3'- gaAGaac-UGCCGCG----CCAgCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 37228 0.7 0.216412
Target:  5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3'
miRNA:   3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5'
26730 5' -60 NC_005808.1 + 36211 0.67 0.355871
Target:  5'- -----cGAgGGCGCcG-CGGCGGCCg -3'
miRNA:   3'- gaagaaCUgCCGCGcCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 34557 0.7 0.222111
Target:  5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3'
miRNA:   3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 32069 0.66 0.398446
Target:  5'- ----gUGGCGGCggaaagcGUGGcCGGCGGUCa -3'
miRNA:   3'- gaagaACUGCCG-------CGCCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 31370 0.66 0.408442
Target:  5'- --gCUaGugGGCGUGGgcgggaacgUGGCGGUCa -3'
miRNA:   3'- gaaGAaCugCCGCGCCa--------GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 29321 0.75 0.104159
Target:  5'- aCUUCaaGGCGGUgGCGGUCGcCGGCCa -3'
miRNA:   3'- -GAAGaaCUGCCG-CGCCAGCcGCCGGa -5'
26730 5' -60 NC_005808.1 + 28615 0.67 0.347585
Target:  5'- --cCUUGAaccgGGCGCGGaugaGGCcGGCCa -3'
miRNA:   3'- gaaGAACUg---CCGCGCCag--CCG-CCGGa -5'
26730 5' -60 NC_005808.1 + 27521 0.74 0.126469
Target:  5'- gCUUCU---CGGCGCGGUCGG-GGUCUu -3'
miRNA:   3'- -GAAGAacuGCCGCGCCAGCCgCCGGA- -5'
26730 5' -60 NC_005808.1 + 26528 0.68 0.29349
Target:  5'- -aUCU--ACGGCGCcGcgcgCGGCGGCCa -3'
miRNA:   3'- gaAGAacUGCCGCGcCa---GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 25581 0.66 0.427013
Target:  5'- ---gUUGuACGcCGCGGUCuGCGGCCc -3'
miRNA:   3'- gaagAAC-UGCcGCGCCAGcCGCCGGa -5'
26730 5' -60 NC_005808.1 + 23529 0.7 0.210839
Target:  5'- cCUUCcaGGCGGCgcacGCGGUCGaUGGCCUc -3'
miRNA:   3'- -GAAGaaCUGCCG----CGCCAGCcGCCGGA- -5'
26730 5' -60 NC_005808.1 + 22610 0.68 0.286321
Target:  5'- ---gUUGGCGaguucuaCGCGGacaUCGGCGGCCUg -3'
miRNA:   3'- gaagAACUGCc------GCGCC---AGCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 22063 0.66 0.408442
Target:  5'- --gCUUGcuCGGguCGCGGUCGGCGcGCg- -3'
miRNA:   3'- gaaGAACu-GCC--GCGCCAGCCGC-CGga -5'
26730 5' -60 NC_005808.1 + 21446 0.72 0.175205
Target:  5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3'
miRNA:   3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 20607 0.73 0.129997
Target:  5'- cCUUCgccaGGCGGCGUcgcaGGUCGGUgucGGCCUg -3'
miRNA:   3'- -GAAGaa--CUGCCGCG----CCAGCCG---CCGGA- -5'
26730 5' -60 NC_005808.1 + 20209 0.66 0.399348
Target:  5'- -gUCUUGGCaGCgcccGCGGcCGGCuguuGGCCUu -3'
miRNA:   3'- gaAGAACUGcCG----CGCCaGCCG----CCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.