miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 5' -60 NC_005808.1 + 19367 0.78 0.060877
Target:  5'- -----cGA-GGCGCGGUCGGUGGCCg -3'
miRNA:   3'- gaagaaCUgCCGCGCCAGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 41908 0.67 0.347585
Target:  5'- -aUCUUGGgcgcccggcCGGCGCcgccGUaGGCGGCCUg -3'
miRNA:   3'- gaAGAACU---------GCCGCGc---CAgCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 22610 0.68 0.286321
Target:  5'- ---gUUGGCGaguucuaCGCGGacaUCGGCGGCCUg -3'
miRNA:   3'- gaagAACUGCc------GCGCC---AGCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 40460 0.69 0.272399
Target:  5'- -----cGGCGGCGCGGUUGacCGGCUg -3'
miRNA:   3'- gaagaaCUGCCGCGCCAGCc-GCCGGa -5'
26730 5' -60 NC_005808.1 + 13691 0.69 0.252542
Target:  5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3'
miRNA:   3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5'
26730 5' -60 NC_005808.1 + 34557 0.7 0.222111
Target:  5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3'
miRNA:   3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 38438 0.66 0.408442
Target:  5'- -cUCgaccACGGCGCgcaaGGUgGGCGGCUUc -3'
miRNA:   3'- gaAGaac-UGCCGCG----CCAgCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 14036 0.66 0.381554
Target:  5'- -----cGACGuGCGCgccgcgauGGcCGGCGGCCg -3'
miRNA:   3'- gaagaaCUGC-CGCG--------CCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 1095 0.68 0.323562
Target:  5'- aCUUCaUGuuGGCgGCGGUaGGCGGCa- -3'
miRNA:   3'- -GAAGaACugCCG-CGCCAgCCGCCGga -5'
26730 5' -60 NC_005808.1 + 9856 0.69 0.265644
Target:  5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3'
miRNA:   3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5'
26730 5' -60 NC_005808.1 + 14753 0.76 0.090548
Target:  5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3'
miRNA:   3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5'
26730 5' -60 NC_005808.1 + 32069 0.66 0.398446
Target:  5'- ----gUGGCGGCggaaagcGUGGcCGGCGGUCa -3'
miRNA:   3'- gaagaACUGCCG-------CGCCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 21446 0.72 0.175205
Target:  5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3'
miRNA:   3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 26528 0.68 0.29349
Target:  5'- -aUCU--ACGGCGCcGcgcgCGGCGGCCa -3'
miRNA:   3'- gaAGAacUGCCGCGcCa---GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 31370 0.66 0.408442
Target:  5'- --gCUaGugGGCGUGGgcgggaacgUGGCGGUCa -3'
miRNA:   3'- gaaGAaCugCCGCGCCa--------GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 5413 0.71 0.204316
Target:  5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3'
miRNA:   3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5'
26730 5' -60 NC_005808.1 + 10221 0.67 0.372857
Target:  5'- gCUUCcugcugGGCGGC-CGGggccUCGGCGGCg- -3'
miRNA:   3'- -GAAGaa----CUGCCGcGCC----AGCCGCCGga -5'
26730 5' -60 NC_005808.1 + 8204 0.68 0.308246
Target:  5'- -aUCgcgcACGGCcucguagucgcGCuGGUCGGCGGCCg -3'
miRNA:   3'- gaAGaac-UGCCG-----------CG-CCAGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 9330 0.68 0.29349
Target:  5'- -----cGuCGGCGCGGcgggCGGCGGCa- -3'
miRNA:   3'- gaagaaCuGCCGCGCCa---GCCGCCGga -5'
26730 5' -60 NC_005808.1 + 17663 0.69 0.272398
Target:  5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3'
miRNA:   3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.