Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26731 | 3' | -53.8 | NC_005808.1 | + | 1239 | 0.66 | 0.764702 |
Target: 5'- cCCCUUgagugauauaaaaAUUcCGCCGUCCGGCgAGcgcCGGu -3' miRNA: 3'- -GGGAA-------------UAA-GCGGCGGGUCG-UCaa-GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 2668 | 0.66 | 0.755315 |
Target: 5'- --------gGUCGCCCAGguGUUCGa -3' miRNA: 3'- gggaauaagCGGCGGGUCguCAAGCc -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 42394 | 0.66 | 0.755315 |
Target: 5'- gCCa-GUUCGCCgugucGCCCGGCAGcgugaCGGu -3' miRNA: 3'- gGGaaUAAGCGG-----CGGGUCGUCaa---GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 31236 | 0.66 | 0.755315 |
Target: 5'- cCCCggcg-CGCgGCCCAGCuacgagcCGGg -3' miRNA: 3'- -GGGaauaaGCGgCGGGUCGucaa---GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 29666 | 0.66 | 0.744761 |
Target: 5'- -------cCGuuGCCCAGCAGggcgCGGc -3' miRNA: 3'- gggaauaaGCggCGGGUCGUCaa--GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 10113 | 0.66 | 0.743699 |
Target: 5'- gCCUUggAUUCgggcgcaucgGCCGCCCccaccucGGCAGUagGGg -3' miRNA: 3'- gGGAA--UAAG----------CGGCGGG-------UCGUCAagCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 2063 | 0.66 | 0.734089 |
Target: 5'- uUCCUcggggUCGUCGCCCAGCAccaCGa -3' miRNA: 3'- -GGGAaua--AGCGGCGGGUCGUcaaGCc -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 5793 | 0.66 | 0.723311 |
Target: 5'- uCCCgccaUCGCgGCagcgCCAGCGGauagUCGGg -3' miRNA: 3'- -GGGaauaAGCGgCG----GGUCGUCa---AGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 27456 | 0.66 | 0.721144 |
Target: 5'- gCCCUgggcgcaucCGCCG-CCAGCAuGgggUCGGg -3' miRNA: 3'- -GGGAauaa-----GCGGCgGGUCGU-Ca--AGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 982 | 0.67 | 0.712439 |
Target: 5'- gCCac-UUgGCCGCCUGGCGGUgccgUGGu -3' miRNA: 3'- gGGaauAAgCGGCGGGUCGUCAa---GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 18112 | 0.67 | 0.712439 |
Target: 5'- gCCUUcg-CGCCGUCCGGUAcgUCGa -3' miRNA: 3'- gGGAAuaaGCGGCGGGUCGUcaAGCc -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 33769 | 0.67 | 0.712439 |
Target: 5'- gCCCgcGUUgCGgcuggcCCGaCCCAGCAGaUCGGu -3' miRNA: 3'- -GGGaaUAA-GC------GGC-GGGUCGUCaAGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 4864 | 0.67 | 0.701485 |
Target: 5'- gCCCggucaggUCGuuGCCCAGCg---CGGc -3' miRNA: 3'- -GGGaaua---AGCggCGGGUCGucaaGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 2732 | 0.67 | 0.701485 |
Target: 5'- aCgCUUGagCGCgGCCCGGCGcuGcUCGGg -3' miRNA: 3'- -GgGAAUaaGCGgCGGGUCGU--CaAGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 33401 | 0.67 | 0.690461 |
Target: 5'- gCCg----CGCCGCCgAGCAGgccaacgUCGa -3' miRNA: 3'- gGGaauaaGCGGCGGgUCGUCa------AGCc -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 32634 | 0.67 | 0.690461 |
Target: 5'- gCCgcggUCGCUGUCCuGUcgaAGUUCGGc -3' miRNA: 3'- gGGaauaAGCGGCGGGuCG---UCAAGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 20191 | 0.67 | 0.690461 |
Target: 5'- gCCUUG-UCGUCGCCCucggucuuGGCAGcgcccgCGGc -3' miRNA: 3'- gGGAAUaAGCGGCGGG--------UCGUCaa----GCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 9571 | 0.67 | 0.668251 |
Target: 5'- -aCUUGcacUUGCCGCCCAGCA--UCGu -3' miRNA: 3'- ggGAAUa--AGCGGCGGGUCGUcaAGCc -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 7270 | 0.68 | 0.657087 |
Target: 5'- gCCUUGUgcaGCUuCUCGGCGGUggUCGGa -3' miRNA: 3'- gGGAAUAag-CGGcGGGUCGUCA--AGCC- -5' |
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26731 | 3' | -53.8 | NC_005808.1 | + | 5231 | 0.68 | 0.6459 |
Target: 5'- aCCCagcaGUUCGCgcaguuCGgCCGGCAGgUCGGg -3' miRNA: 3'- -GGGaa--UAAGCG------GCgGGUCGUCaAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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