miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26732 5' -60.5 NC_005808.1 + 2134 1.1 0.000169
Target:  5'- cGUGCAGCAGCCGGUCAACCGCGCCGCc -3'
miRNA:   3'- -CACGUCGUCGGCCAGUUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 33320 0.78 0.047434
Target:  5'- aUGC-GCAGCCGGUguACCGgGCCGa -3'
miRNA:   3'- cACGuCGUCGGCCAguUGGCgCGGCg -5'
26732 5' -60.5 NC_005808.1 + 16978 0.78 0.054798
Target:  5'- -cGC-GCuGCUGG-CGACCGCGCCGCc -3'
miRNA:   3'- caCGuCGuCGGCCaGUUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 19714 0.77 0.063267
Target:  5'- -cGCAGCAGUCGuUCAACCGCGCg-- -3'
miRNA:   3'- caCGUCGUCGGCcAGUUGGCGCGgcg -5'
26732 5' -60.5 NC_005808.1 + 4416 0.76 0.07094
Target:  5'- cGUGCGGCAGUCguaGGUCGuacCCG-GCCGCa -3'
miRNA:   3'- -CACGUCGUCGG---CCAGUu--GGCgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 8785 0.76 0.075105
Target:  5'- -cGCGGC-GCacgaugGGUCGGCCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGg-----CCAGUUGGCGCGGCg -5'
26732 5' -60.5 NC_005808.1 + 10226 0.75 0.081794
Target:  5'- cUGCugGGCGGCCGGggccUCGGCgGCGaCCGCa -3'
miRNA:   3'- cACG--UCGUCGGCC----AGUUGgCGC-GGCG- -5'
26732 5' -60.5 NC_005808.1 + 10894 0.75 0.081794
Target:  5'- -cGCGGCgGGCUGGUCAgGCgGUGCUGCa -3'
miRNA:   3'- caCGUCG-UCGGCCAGU-UGgCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 20455 0.75 0.086566
Target:  5'- aGUGCAGCaccaccgugcaaAGCCuGuUCGACCGCGgCGCg -3'
miRNA:   3'- -CACGUCG------------UCGGcC-AGUUGGCGCgGCG- -5'
26732 5' -60.5 NC_005808.1 + 7333 0.75 0.088298
Target:  5'- -cGCAGCAGCCGGUUGGCgucgaucaaccacuCGUGCCa- -3'
miRNA:   3'- caCGUCGUCGGCCAGUUG--------------GCGCGGcg -5'
26732 5' -60.5 NC_005808.1 + 16867 0.75 0.08905
Target:  5'- cGUGCuGCcGCCGGUgaggacgaCGACCcCGCCGCg -3'
miRNA:   3'- -CACGuCGuCGGCCA--------GUUGGcGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 8672 0.75 0.091602
Target:  5'- uGUGCAGCGGCU-----GCUGCGCCGCc -3'
miRNA:   3'- -CACGUCGUCGGccaguUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 3549 0.74 0.094223
Target:  5'- -cGC-GCAGuCCcGcCAACCGCGCCGCa -3'
miRNA:   3'- caCGuCGUC-GGcCaGUUGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 40454 0.74 0.094223
Target:  5'- cGUGUacGGCGGCgCGGUUGACCG-GCUGCu -3'
miRNA:   3'- -CACG--UCGUCG-GCCAGUUGGCgCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 26497 0.74 0.100806
Target:  5'- cGUGCAGcCGGUCguGGUCAacaacacgaccaucuACgGCGCCGCg -3'
miRNA:   3'- -CACGUC-GUCGG--CCAGU---------------UGgCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 24712 0.74 0.108426
Target:  5'- -cGguGcCAGUCGGUCGggccgcuuccACCGCGCCuGCg -3'
miRNA:   3'- caCguC-GUCGGCCAGU----------UGGCGCGG-CG- -5'
26732 5' -60.5 NC_005808.1 + 9002 0.73 0.119207
Target:  5'- -aGCGGUGGCCGuGcCGgauucgccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 9050 0.73 0.119207
Target:  5'- -aGCGGUGGCCGuGcCGgauucgccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 9098 0.73 0.119207
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26732 5' -60.5 NC_005808.1 + 9146 0.73 0.119207
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.