Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26732 | 5' | -60.5 | NC_005808.1 | + | 8785 | 0.76 | 0.075105 |
Target: 5'- -cGCGGC-GCacgaugGGUCGGCCGCGCCGg -3' miRNA: 3'- caCGUCGuCGg-----CCAGUUGGCGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 23188 | 0.7 | 0.192517 |
Target: 5'- gGUGCgacAGCAGCaGGUCGGCCuCGUCGg -3' miRNA: 3'- -CACG---UCGUCGgCCAGUUGGcGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 8400 | 0.7 | 0.192517 |
Target: 5'- cUGC-GUAGCCaGUCGGCCaGgGCCGUg -3' miRNA: 3'- cACGuCGUCGGcCAGUUGG-CgCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 32808 | 0.7 | 0.185965 |
Target: 5'- gGUGCuGCGcgucuGCCGGUCGgacuacaccaGCCGCaacggcuucgccugGCCGCa -3' miRNA: 3'- -CACGuCGU-----CGGCCAGU----------UGGCG--------------CGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 38170 | 0.71 | 0.168385 |
Target: 5'- gGUGUuGCGGCCGGguaCGACCuacgacUGCCGCa -3' miRNA: 3'- -CACGuCGUCGGCCa--GUUGGc-----GCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 15538 | 0.71 | 0.167027 |
Target: 5'- aUGCAcGguGCCGGccuccacguccaggUCAAUgGCGCCGUc -3' miRNA: 3'- cACGU-CguCGGCC--------------AGUUGgCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 31293 | 0.71 | 0.163896 |
Target: 5'- -gGCAGCgaAGCCuGG-CGACCGCGUgGUg -3' miRNA: 3'- caCGUCG--UCGG-CCaGUUGGCGCGgCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28198 | 0.71 | 0.163453 |
Target: 5'- gGUGCGGC-GCCuuguccaGGUCGGCCaCGCCGa -3' miRNA: 3'- -CACGUCGuCGG-------CCAGUUGGcGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 29107 | 0.71 | 0.159514 |
Target: 5'- cGUGCGggacuuGCuGCCGGUCAcGCgCGCgagGCCGCa -3' miRNA: 3'- -CACGU------CGuCGGCCAGU-UG-GCG---CGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 14359 | 0.71 | 0.159514 |
Target: 5'- -cGCGGUguccuggaaGGCgGGggCAuCCGCGCCGCg -3' miRNA: 3'- caCGUCG---------UCGgCCa-GUuGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 21822 | 0.72 | 0.152724 |
Target: 5'- uUGCAGCGGCgGGUUgcucuuguagucgauGGCCuGCGCCuuGCg -3' miRNA: 3'- cACGUCGUCGgCCAG---------------UUGG-CGCGG--CG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28149 | 0.72 | 0.146998 |
Target: 5'- -aGCAGCuuGCCGGuggucagaUCGACCaCGCCGUu -3' miRNA: 3'- caCGUCGu-CGGCC--------AGUUGGcGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 7764 | 0.72 | 0.146998 |
Target: 5'- uUGCAGCA-CCGGcgCGAuCUGCGCCGg -3' miRNA: 3'- cACGUCGUcGGCCa-GUU-GGCGCGGCg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 27832 | 0.72 | 0.143029 |
Target: 5'- cUGCccGCGGUgGcGcCGGCCGCGCCGCu -3' miRNA: 3'- cACGu-CGUCGgC-CaGUUGGCGCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 28554 | 0.72 | 0.135384 |
Target: 5'- uUGCGGCcGCCGGcC-AUCGCGgCGCg -3' miRNA: 3'- cACGUCGuCGGCCaGuUGGCGCgGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 19029 | 0.73 | 0.124618 |
Target: 5'- gGUGCGGUAGCCcuGGUagCGGCCGCcgGCgGCg -3' miRNA: 3'- -CACGUCGUCGG--CCA--GUUGGCG--CGgCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 39846 | 0.73 | 0.12121 |
Target: 5'- -gGCAGUGGUCGG-CAcgcccgagcagcGCCGgGCCGCg -3' miRNA: 3'- caCGUCGUCGGCCaGU------------UGGCgCGGCG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 24712 | 0.74 | 0.108426 |
Target: 5'- -cGguGcCAGUCGGUCGggccgcuuccACCGCGCCuGCg -3' miRNA: 3'- caCguC-GUCGGCCAGU----------UGGCGCGG-CG- -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 7333 | 0.75 | 0.088298 |
Target: 5'- -cGCAGCAGCCGGUUGGCgucgaucaaccacuCGUGCCa- -3' miRNA: 3'- caCGUCGUCGGCCAGUUG--------------GCGCGGcg -5' |
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26732 | 5' | -60.5 | NC_005808.1 | + | 2134 | 1.1 | 0.000169 |
Target: 5'- cGUGCAGCAGCCGGUCAACCGCGCCGCc -3' miRNA: 3'- -CACGUCGUCGGCCAGUUGGCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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