miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 3' -60.5 NC_005808.1 + 6628 0.66 0.392064
Target:  5'- --cGCCGCCaGCUUcGCGCGCU-UGGc -3'
miRNA:   3'- cuuCGGCGGgUGGAaCGCGCGGcACC- -5'
26734 3' -60.5 NC_005808.1 + 995 0.66 0.392064
Target:  5'- --cGUCGCCCGCUgccCGCGCCacUGGc -3'
miRNA:   3'- cuuCGGCGGGUGGaacGCGCGGc-ACC- -5'
26734 3' -60.5 NC_005808.1 + 18384 0.66 0.392064
Target:  5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3'
miRNA:   3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5'
26734 3' -60.5 NC_005808.1 + 31508 0.66 0.386738
Target:  5'- --uGCCGCCgGCgUgcugcugggccucgcUGUGuUGCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgUGgA---------------ACGC-GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 16593 0.66 0.383214
Target:  5'- cGAGGCCGaCCACgCgaugguguugGCGCcGCCGUuGGu -3'
miRNA:   3'- -CUUCGGCgGGUG-Gaa--------CGCG-CGGCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 24126 0.66 0.383214
Target:  5'- aGggGUCGUaguCCAgCCggcUGCGCGCC-UGGc -3'
miRNA:   3'- -CuuCGGCG---GGU-GGa--ACGCGCGGcACC- -5'
26734 3' -60.5 NC_005808.1 + 19741 0.66 0.383214
Target:  5'- aGAAGCaGCCCAauUCgcagcGCGCGCUGUcGGc -3'
miRNA:   3'- -CUUCGgCGGGU--GGaa---CGCGCGGCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 27830 0.66 0.374497
Target:  5'- --cGCUGCCCGCggUG-GCGCCGg-- -3'
miRNA:   3'- cuuCGGCGGGUGgaACgCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 29667 0.66 0.374497
Target:  5'- --cGuuGCCCAgCaggGCGCGgCCGUGu -3'
miRNA:   3'- cuuCggCGGGUgGaa-CGCGC-GGCACc -5'
26734 3' -60.5 NC_005808.1 + 41954 0.66 0.371049
Target:  5'- aAAGCC-CCCGCCUgacccguucaccCGCGCCGaGGc -3'
miRNA:   3'- cUUCGGcGGGUGGAac----------GCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 14267 0.66 0.365916
Target:  5'- cGAGGCCaagGCCaucgaguccgaCGCCgaGCGCGCCGa-- -3'
miRNA:   3'- -CUUCGG---CGG-----------GUGGaaCGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 38509 0.66 0.357472
Target:  5'- --cGCCGCCCACCUgGCcgGC-CUGaUGGc -3'
miRNA:   3'- cuuCGGCGGGUGGAaCG--CGcGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 30140 0.66 0.357472
Target:  5'- --cGCCGCCgGCCUgcacCGCGUCGg-- -3'
miRNA:   3'- cuuCGGCGGgUGGAac--GCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 25744 0.66 0.357472
Target:  5'- -cGGCgGCagcaCGCUggGCGCGCUGcUGGg -3'
miRNA:   3'- cuUCGgCGg---GUGGaaCGCGCGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 23469 0.66 0.349165
Target:  5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3'
miRNA:   3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 25284 0.67 0.344247
Target:  5'- cAAGCCgGCCCauauGCCggaauggaUGCGCGCCcgcggcgccggcuucGUGGa -3'
miRNA:   3'- cUUCGG-CGGG----UGGa-------ACGCGCGG---------------CACC- -5'
26734 3' -60.5 NC_005808.1 + 16943 0.67 0.340996
Target:  5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3'
miRNA:   3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5'
26734 3' -60.5 NC_005808.1 + 34871 0.67 0.332967
Target:  5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3'
miRNA:   3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 11352 0.67 0.331378
Target:  5'- --cGUCGCCCGgCUcguagcugggccGCGCGCCG-GGg -3'
miRNA:   3'- cuuCGGCGGGUgGAa-----------CGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 12665 0.67 0.325077
Target:  5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3'
miRNA:   3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.