miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 3' -60.5 NC_005808.1 + 23469 0.66 0.349165
Target:  5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3'
miRNA:   3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 980 0.69 0.241222
Target:  5'- -cAGCCacuuGgCCGCCUgGCgGUGCCGUGGu -3'
miRNA:   3'- cuUCGG----CgGGUGGAaCG-CGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 38549 0.68 0.260339
Target:  5'- uGGGCCGCUgGCCUgccGCuCGCCGcGGc -3'
miRNA:   3'- cUUCGGCGGgUGGAa--CGcGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 34046 0.68 0.280672
Target:  5'- --cGCUGCCCGCCaucgGCGCgGCUGUc- -3'
miRNA:   3'- cuuCGGCGGGUGGaa--CGCG-CGGCAcc -5'
26734 3' -60.5 NC_005808.1 + 37167 0.68 0.287725
Target:  5'- ---cUCGCCCacGCCgccaucCGCGCCGUGGa -3'
miRNA:   3'- cuucGGCGGG--UGGaac---GCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 18090 0.67 0.317327
Target:  5'- cGAAGCCGgCgcgaaccaggaCGCCUU-CGCGCCGUccGGu -3'
miRNA:   3'- -CUUCGGCgG-----------GUGGAAcGCGCGGCA--CC- -5'
26734 3' -60.5 NC_005808.1 + 12665 0.67 0.325077
Target:  5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3'
miRNA:   3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5'
26734 3' -60.5 NC_005808.1 + 34871 0.67 0.332967
Target:  5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3'
miRNA:   3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 16943 0.67 0.340996
Target:  5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3'
miRNA:   3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5'
26734 3' -60.5 NC_005808.1 + 38152 0.69 0.229139
Target:  5'- aGAAGCCGCaCGCCUggcgguguUGCG-GCCG-GGu -3'
miRNA:   3'- -CUUCGGCGgGUGGA--------ACGCgCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 15086 0.69 0.229139
Target:  5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3'
miRNA:   3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5'
26734 3' -60.5 NC_005808.1 + 41501 0.7 0.218137
Target:  5'- --uGCCGCCUACCgccgccaacaugaagUacGCGCGCCG-GGu -3'
miRNA:   3'- cuuCGGCGGGUGGa--------------A--CGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 8036 0.74 0.099119
Target:  5'- aGGGCCGCCguCCUUGC-CGCCGUc- -3'
miRNA:   3'- cUUCGGCGGguGGAACGcGCGGCAcc -5'
26734 3' -60.5 NC_005808.1 + 601 0.73 0.117125
Target:  5'- -uGGCCGCCUgcgggucgGCCa-GCaGCGCCGUGGa -3'
miRNA:   3'- cuUCGGCGGG--------UGGaaCG-CGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 11157 0.72 0.138143
Target:  5'- uGGGCCGCCugcgCACgUUGCGUgcgcuggucgGCCGUGGu -3'
miRNA:   3'- cUUCGGCGG----GUGgAACGCG----------CGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 28557 0.72 0.149906
Target:  5'- -cGGCCGCCgGCCaucgcgGCGCGCaCGUcGGc -3'
miRNA:   3'- cuUCGGCGGgUGGaa----CGCGCG-GCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 677 0.71 0.171544
Target:  5'- cAGGCCGCCUACg--GCgGCGCCGgccGGg -3'
miRNA:   3'- cUUCGGCGGGUGgaaCG-CGCGGCa--CC- -5'
26734 3' -60.5 NC_005808.1 + 8644 0.7 0.19593
Target:  5'- cGAGGUCGCCgGCCUUcauCGCGCgGUcGGc -3'
miRNA:   3'- -CUUCGGCGGgUGGAAc--GCGCGgCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 19932 0.7 0.19593
Target:  5'- --cGCCGCCgAacuCCUUGuCG-GCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgU---GGAAC-GCgCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 21131 0.7 0.211975
Target:  5'- cGAcGCUGCCCAgCUUgGC-CGCCGUGu -3'
miRNA:   3'- -CUuCGGCGGGUgGAA-CGcGCGGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.