miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 3' -60.5 NC_005808.1 + 40366 0.68 0.287725
Target:  5'- -cGGCCacGCgCCGCCUgcUGCGCGUgGUGc -3'
miRNA:   3'- cuUCGG--CG-GGUGGA--ACGCGCGgCACc -5'
26734 3' -60.5 NC_005808.1 + 33273 0.74 0.10777
Target:  5'- --cGCCGCCCGCCgcgccgacGUGCGCCGccaGGu -3'
miRNA:   3'- cuuCGGCGGGUGGaa------CGCGCGGCa--CC- -5'
26734 3' -60.5 NC_005808.1 + 29156 0.72 0.154025
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 19061 0.69 0.253833
Target:  5'- cGAGGCCaucgaccgcguGCgCCGCCUggaagGCGCGCuCGcGGa -3'
miRNA:   3'- -CUUCGG-----------CG-GGUGGAa----CGCGCG-GCaCC- -5'
26734 3' -60.5 NC_005808.1 + 1762 0.68 0.260339
Target:  5'- -uGGCCgGCCUgcGCCUgGCGCGUCG-GGc -3'
miRNA:   3'- cuUCGG-CGGG--UGGAaCGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 35496 0.71 0.162572
Target:  5'- --cGCaGUCCAUCgugcgcguggGCGCGCCGUGGg -3'
miRNA:   3'- cuuCGgCGGGUGGaa--------CGCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 18594 0.7 0.211975
Target:  5'- -uGGCCgacgcGCCCACCUucgccagucUGUGCGCCGa-- -3'
miRNA:   3'- cuUCGG-----CGGGUGGA---------ACGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 8688 0.69 0.235115
Target:  5'- --cGCCGCCCAgg-UGUGCGCCGc-- -3'
miRNA:   3'- cuuCGGCGGGUggaACGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 41884 0.68 0.285595
Target:  5'- aAAGCCGCCCcuauccugggcgguAUCUUGgGCGCCc-GGc -3'
miRNA:   3'- cUUCGGCGGG--------------UGGAACgCGCGGcaCC- -5'
26734 3' -60.5 NC_005808.1 + 34381 0.67 0.309717
Target:  5'- -cGGCCGCCgACCa-GCGCgacuacgagGCCGUGc -3'
miRNA:   3'- cuUCGGCGGgUGGaaCGCG---------CGGCACc -5'
26734 3' -60.5 NC_005808.1 + 18384 0.66 0.392064
Target:  5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3'
miRNA:   3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5'
26734 3' -60.5 NC_005808.1 + 15279 0.7 0.190822
Target:  5'- aAAGCaaCGCgCGCCUgUGgGCGUCGUGGg -3'
miRNA:   3'- cUUCG--GCGgGUGGA-ACgCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 29207 0.71 0.180955
Target:  5'- cGAuGCCGCCUACaaccGCGCGCUG-GGc -3'
miRNA:   3'- -CUuCGGCGGGUGgaa-CGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 20305 0.68 0.260339
Target:  5'- --uGCUGCCCGaCUU-CGaCGCCGUGGu -3'
miRNA:   3'- cuuCGGCGGGUgGAAcGC-GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 19481 0.68 0.280672
Target:  5'- aGGAGCCGUuaccgcugUCGCCguggGCGCcGCCGuUGGc -3'
miRNA:   3'- -CUUCGGCG--------GGUGGaa--CGCG-CGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 7259 0.7 0.211975
Target:  5'- cGAuGUCGCCgGCCUUGUGCagcuucucgGCgGUGGu -3'
miRNA:   3'- -CUuCGGCGGgUGGAACGCG---------CGgCACC- -5'
26734 3' -60.5 NC_005808.1 + 16845 0.67 0.302247
Target:  5'- --cGCCGCCCAgCa-GCGCGCCcagcGUGc -3'
miRNA:   3'- cuuCGGCGGGUgGaaCGCGCGG----CACc -5'
26734 3' -60.5 NC_005808.1 + 34754 0.67 0.317327
Target:  5'- cGAAGcCCGCCuCACCau-CGCGCUGaacaUGGg -3'
miRNA:   3'- -CUUC-GGCGG-GUGGaacGCGCGGC----ACC- -5'
26734 3' -60.5 NC_005808.1 + 16553 0.69 0.221561
Target:  5'- uGGAGCgCGCCCGCCgcGCGggcuuugaugccauCGCCGaGGa -3'
miRNA:   3'- -CUUCG-GCGGGUGGaaCGC--------------GCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 14023 0.68 0.260339
Target:  5'- --cGCUGCCggugGCCgacgUGCGCGCCGcgaUGGc -3'
miRNA:   3'- cuuCGGCGGg---UGGa---ACGCGCGGC---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.