miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26734 3' -60.5 NC_005808.1 + 16845 0.67 0.302247
Target:  5'- --cGCCGCCCAgCa-GCGCGCCcagcGUGc -3'
miRNA:   3'- cuuCGGCGGGUgGaaCGCGCGG----CACc -5'
26734 3' -60.5 NC_005808.1 + 16943 0.67 0.340996
Target:  5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3'
miRNA:   3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5'
26734 3' -60.5 NC_005808.1 + 18090 0.67 0.317327
Target:  5'- cGAAGCCGgCgcgaaccaggaCGCCUU-CGCGCCGUccGGu -3'
miRNA:   3'- -CUUCGGCgG-----------GUGGAAcGCGCGGCA--CC- -5'
26734 3' -60.5 NC_005808.1 + 18384 0.66 0.392064
Target:  5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3'
miRNA:   3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5'
26734 3' -60.5 NC_005808.1 + 18594 0.7 0.211975
Target:  5'- -uGGCCgacgcGCCCACCUucgccagucUGUGCGCCGa-- -3'
miRNA:   3'- cuUCGG-----CGGGUGGA---------ACGCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 19061 0.69 0.253833
Target:  5'- cGAGGCCaucgaccgcguGCgCCGCCUggaagGCGCGCuCGcGGa -3'
miRNA:   3'- -CUUCGG-----------CG-GGUGGAa----CGCGCG-GCaCC- -5'
26734 3' -60.5 NC_005808.1 + 19481 0.68 0.280672
Target:  5'- aGGAGCCGUuaccgcugUCGCCguggGCGCcGCCGuUGGc -3'
miRNA:   3'- -CUUCGGCG--------GGUGGaa--CGCG-CGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 19741 0.66 0.383214
Target:  5'- aGAAGCaGCCCAauUCgcagcGCGCGCUGUcGGc -3'
miRNA:   3'- -CUUCGgCGGGU--GGaa---CGCGCGGCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 19932 0.7 0.19593
Target:  5'- --cGCCGCCgAacuCCUUGuCG-GCCGUGGa -3'
miRNA:   3'- cuuCGGCGGgU---GGAAC-GCgCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 20305 0.68 0.260339
Target:  5'- --uGCUGCCCGaCUU-CGaCGCCGUGGu -3'
miRNA:   3'- cuuCGGCGGGUgGAAcGC-GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 21131 0.7 0.211975
Target:  5'- cGAcGCUGCCCAgCUUgGC-CGCCGUGu -3'
miRNA:   3'- -CUuCGGCGGGUgGAA-CGcGCGGCACc -5'
26734 3' -60.5 NC_005808.1 + 23469 0.66 0.349165
Target:  5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3'
miRNA:   3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 24126 0.66 0.383214
Target:  5'- aGggGUCGUaguCCAgCCggcUGCGCGCC-UGGc -3'
miRNA:   3'- -CuuCGGCG---GGU-GGa--ACGCGCGGcACC- -5'
26734 3' -60.5 NC_005808.1 + 25284 0.67 0.344247
Target:  5'- cAAGCCgGCCCauauGCCggaauggaUGCGCGCCcgcggcgccggcuucGUGGa -3'
miRNA:   3'- cUUCGG-CGGG----UGGa-------ACGCGCGG---------------CACC- -5'
26734 3' -60.5 NC_005808.1 + 25744 0.66 0.357472
Target:  5'- -cGGCgGCagcaCGCUggGCGCGCUGcUGGg -3'
miRNA:   3'- cuUCGgCGg---GUGGaaCGCGCGGC-ACC- -5'
26734 3' -60.5 NC_005808.1 + 27830 0.66 0.374497
Target:  5'- --cGCUGCCCGCggUG-GCGCCGg-- -3'
miRNA:   3'- cuuCGGCGGGUGgaACgCGCGGCacc -5'
26734 3' -60.5 NC_005808.1 + 28557 0.72 0.149906
Target:  5'- -cGGCCGCCgGCCaucgcgGCGCGCaCGUcGGc -3'
miRNA:   3'- cuUCGGCGGgUGGaa----CGCGCG-GCA-CC- -5'
26734 3' -60.5 NC_005808.1 + 29156 0.72 0.154025
Target:  5'- cGAGGCCGCCaAgCUgGCGggccUGCCGUGGg -3'
miRNA:   3'- -CUUCGGCGGgUgGAaCGC----GCGGCACC- -5'
26734 3' -60.5 NC_005808.1 + 29207 0.71 0.180955
Target:  5'- cGAuGCCGCCUACaaccGCGCGCUG-GGc -3'
miRNA:   3'- -CUuCGGCGGGUGgaa-CGCGCGGCaCC- -5'
26734 3' -60.5 NC_005808.1 + 29667 0.66 0.374497
Target:  5'- --cGuuGCCCAgCaggGCGCGgCCGUGu -3'
miRNA:   3'- cuuCggCGGGUgGaa-CGCGC-GGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.