miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26739 3' -52.2 NC_005808.1 + 40228 0.66 0.855472
Target:  5'- --aCGcgGGCGUCUGccacGUGCAGGCCGa -3'
miRNA:   3'- gcaGCaaCUGCGGGCu---UAUGUCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 13696 0.66 0.846776
Target:  5'- uGUCGUcGGCGUCCaucugcccgGAAUACuuguugagguAGGCCGa -3'
miRNA:   3'- gCAGCAaCUGCGGG---------CUUAUG----------UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 18130 0.66 0.846776
Target:  5'- aCGUCGaacUUGuCGCCCGGcucgcGCAGcuuGCCGa -3'
miRNA:   3'- -GCAGC---AACuGCGGGCUua---UGUC---UGGC- -5'
26739 3' -52.2 NC_005808.1 + 8462 0.66 0.846776
Target:  5'- gCGUCGagGugGCCUGcGAUgccGCAG-CCGa -3'
miRNA:   3'- -GCAGCaaCugCGGGC-UUA---UGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 7178 0.66 0.837842
Target:  5'- aCG-CGcUGACGCCCuGAcGCAG-CCGg -3'
miRNA:   3'- -GCaGCaACUGCGGGcUUaUGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 32486 0.66 0.828682
Target:  5'- gGcCGaUG-CGCCCGAAUccaAGGCCGa -3'
miRNA:   3'- gCaGCaACuGCGGGCUUAug-UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 15669 0.66 0.828682
Target:  5'- --cCGgcu-CGCCCGAGUACgucAGGCCGc -3'
miRNA:   3'- gcaGCaacuGCGGGCUUAUG---UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 24666 0.66 0.819304
Target:  5'- uGUUGUc-GCGCCCGcc-GCGGGCCa -3'
miRNA:   3'- gCAGCAacUGCGGGCuuaUGUCUGGc -5'
26739 3' -52.2 NC_005808.1 + 23281 0.67 0.799939
Target:  5'- uGUCGgcGuGCGCCaCGAAUGCcuguuugcGGCCGg -3'
miRNA:   3'- gCAGCaaC-UGCGG-GCUUAUGu-------CUGGC- -5'
26739 3' -52.2 NC_005808.1 + 32999 0.68 0.759091
Target:  5'- aCGUCGaacucACGCCCGAgGUGCGcaacguguucGACCGg -3'
miRNA:   3'- -GCAGCaac--UGCGGGCU-UAUGU----------CUGGC- -5'
26739 3' -52.2 NC_005808.1 + 17000 0.68 0.759091
Target:  5'- cCGUgGUUGccacUGCCUGGGccGCAGACCGc -3'
miRNA:   3'- -GCAgCAACu---GCGGGCUUa-UGUCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 22007 0.68 0.737799
Target:  5'- -uUCGUcGGCGCCUGGcucgaaAUAGACCGa -3'
miRNA:   3'- gcAGCAaCUGCGGGCUua----UGUCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 8173 0.68 0.737799
Target:  5'- gCG-CGU--GCGCCCGGAUGCu-GCCGg -3'
miRNA:   3'- -GCaGCAacUGCGGGCUUAUGucUGGC- -5'
26739 3' -52.2 NC_005808.1 + 10385 0.68 0.71606
Target:  5'- uGUCGccGAUGUCCGGgugAUGCAGcgcGCCGa -3'
miRNA:   3'- gCAGCaaCUGCGGGCU---UAUGUC---UGGC- -5'
26739 3' -52.2 NC_005808.1 + 38982 0.68 0.705053
Target:  5'- gCGgCGUgaaUGGCGCauCCGAAUACAcGGCCa -3'
miRNA:   3'- -GCaGCA---ACUGCG--GGCUUAUGU-CUGGc -5'
26739 3' -52.2 NC_005808.1 + 15376 0.69 0.693972
Target:  5'- -cUCGgUGagcGCGUCCGcGUGCGGGCCGg -3'
miRNA:   3'- gcAGCaAC---UGCGGGCuUAUGUCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 29965 0.69 0.693972
Target:  5'- uCGUCGcggcgcacGACgGCCUGGAUGCAG-CCGu -3'
miRNA:   3'- -GCAGCaa------CUG-CGGGCUUAUGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 2721 0.69 0.682828
Target:  5'- aCGUUGgccgGACGCuuGAGcGCGGcCCGg -3'
miRNA:   3'- -GCAGCaa--CUGCGggCUUaUGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 6540 0.69 0.682828
Target:  5'- gGUCGUcGuCGCCCGAAUcgcCAGGCg- -3'
miRNA:   3'- gCAGCAaCuGCGGGCUUAu--GUCUGgc -5'
26739 3' -52.2 NC_005808.1 + 15040 0.69 0.649136
Target:  5'- uGUUGgcGAUGCCCGcguuGAUGCGGGCa- -3'
miRNA:   3'- gCAGCaaCUGCGGGC----UUAUGUCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.