Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26739 | 3' | -52.2 | NC_005808.1 | + | 40228 | 0.66 | 0.855472 |
Target: 5'- --aCGcgGGCGUCUGccacGUGCAGGCCGa -3' miRNA: 3'- gcaGCaaCUGCGGGCu---UAUGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 8462 | 0.66 | 0.846776 |
Target: 5'- gCGUCGagGugGCCUGcGAUgccGCAG-CCGa -3' miRNA: 3'- -GCAGCaaCugCGGGC-UUA---UGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 18130 | 0.66 | 0.846776 |
Target: 5'- aCGUCGaacUUGuCGCCCGGcucgcGCAGcuuGCCGa -3' miRNA: 3'- -GCAGC---AACuGCGGGCUua---UGUC---UGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 13696 | 0.66 | 0.846776 |
Target: 5'- uGUCGUcGGCGUCCaucugcccgGAAUACuuguugagguAGGCCGa -3' miRNA: 3'- gCAGCAaCUGCGGG---------CUUAUG----------UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 7178 | 0.66 | 0.837842 |
Target: 5'- aCG-CGcUGACGCCCuGAcGCAG-CCGg -3' miRNA: 3'- -GCaGCaACUGCGGGcUUaUGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 15669 | 0.66 | 0.828682 |
Target: 5'- --cCGgcu-CGCCCGAGUACgucAGGCCGc -3' miRNA: 3'- gcaGCaacuGCGGGCUUAUG---UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 32486 | 0.66 | 0.828682 |
Target: 5'- gGcCGaUG-CGCCCGAAUccaAGGCCGa -3' miRNA: 3'- gCaGCaACuGCGGGCUUAug-UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 24666 | 0.66 | 0.819304 |
Target: 5'- uGUUGUc-GCGCCCGcc-GCGGGCCa -3' miRNA: 3'- gCAGCAacUGCGGGCuuaUGUCUGGc -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 23281 | 0.67 | 0.799939 |
Target: 5'- uGUCGgcGuGCGCCaCGAAUGCcuguuugcGGCCGg -3' miRNA: 3'- gCAGCaaC-UGCGG-GCUUAUGu-------CUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 32999 | 0.68 | 0.759091 |
Target: 5'- aCGUCGaacucACGCCCGAgGUGCGcaacguguucGACCGg -3' miRNA: 3'- -GCAGCaac--UGCGGGCU-UAUGU----------CUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 17000 | 0.68 | 0.759091 |
Target: 5'- cCGUgGUUGccacUGCCUGGGccGCAGACCGc -3' miRNA: 3'- -GCAgCAACu---GCGGGCUUa-UGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 8173 | 0.68 | 0.737799 |
Target: 5'- gCG-CGU--GCGCCCGGAUGCu-GCCGg -3' miRNA: 3'- -GCaGCAacUGCGGGCUUAUGucUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 22007 | 0.68 | 0.737799 |
Target: 5'- -uUCGUcGGCGCCUGGcucgaaAUAGACCGa -3' miRNA: 3'- gcAGCAaCUGCGGGCUua----UGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 10385 | 0.68 | 0.71606 |
Target: 5'- uGUCGccGAUGUCCGGgugAUGCAGcgcGCCGa -3' miRNA: 3'- gCAGCaaCUGCGGGCU---UAUGUC---UGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 38982 | 0.68 | 0.705053 |
Target: 5'- gCGgCGUgaaUGGCGCauCCGAAUACAcGGCCa -3' miRNA: 3'- -GCaGCA---ACUGCG--GGCUUAUGU-CUGGc -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 15376 | 0.69 | 0.693972 |
Target: 5'- -cUCGgUGagcGCGUCCGcGUGCGGGCCGg -3' miRNA: 3'- gcAGCaAC---UGCGGGCuUAUGUCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 29965 | 0.69 | 0.693972 |
Target: 5'- uCGUCGcggcgcacGACgGCCUGGAUGCAG-CCGu -3' miRNA: 3'- -GCAGCaa------CUG-CGGGCUUAUGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 6540 | 0.69 | 0.682828 |
Target: 5'- gGUCGUcGuCGCCCGAAUcgcCAGGCg- -3' miRNA: 3'- gCAGCAaCuGCGGGCUUAu--GUCUGgc -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 2721 | 0.69 | 0.682828 |
Target: 5'- aCGUUGgccgGACGCuuGAGcGCGGcCCGg -3' miRNA: 3'- -GCAGCaa--CUGCGggCUUaUGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 15040 | 0.69 | 0.649136 |
Target: 5'- uGUUGgcGAUGCCCGcguuGAUGCGGGCa- -3' miRNA: 3'- gCAGCaaCUGCGGGC----UUAUGUCUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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