Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26739 | 3' | -52.2 | NC_005808.1 | + | 15669 | 0.66 | 0.828682 |
Target: 5'- --cCGgcu-CGCCCGAGUACgucAGGCCGc -3' miRNA: 3'- gcaGCaacuGCGGGCUUAUG---UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 32486 | 0.66 | 0.828682 |
Target: 5'- gGcCGaUG-CGCCCGAAUccaAGGCCGa -3' miRNA: 3'- gCaGCaACuGCGGGCUUAug-UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 7178 | 0.66 | 0.837842 |
Target: 5'- aCG-CGcUGACGCCCuGAcGCAG-CCGg -3' miRNA: 3'- -GCaGCaACUGCGGGcUUaUGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 18130 | 0.66 | 0.846776 |
Target: 5'- aCGUCGaacUUGuCGCCCGGcucgcGCAGcuuGCCGa -3' miRNA: 3'- -GCAGC---AACuGCGGGCUua---UGUC---UGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 13696 | 0.66 | 0.846776 |
Target: 5'- uGUCGUcGGCGUCCaucugcccgGAAUACuuguugagguAGGCCGa -3' miRNA: 3'- gCAGCAaCUGCGGG---------CUUAUG----------UCUGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 8462 | 0.66 | 0.846776 |
Target: 5'- gCGUCGagGugGCCUGcGAUgccGCAG-CCGa -3' miRNA: 3'- -GCAGCaaCugCGGGC-UUA---UGUCuGGC- -5' |
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26739 | 3' | -52.2 | NC_005808.1 | + | 40228 | 0.66 | 0.855472 |
Target: 5'- --aCGcgGGCGUCUGccacGUGCAGGCCGa -3' miRNA: 3'- gcaGCaaCUGCGGGCu---UAUGUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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