miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26739 3' -52.2 NC_005808.1 + 15669 0.66 0.828682
Target:  5'- --cCGgcu-CGCCCGAGUACgucAGGCCGc -3'
miRNA:   3'- gcaGCaacuGCGGGCUUAUG---UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 32486 0.66 0.828682
Target:  5'- gGcCGaUG-CGCCCGAAUccaAGGCCGa -3'
miRNA:   3'- gCaGCaACuGCGGGCUUAug-UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 7178 0.66 0.837842
Target:  5'- aCG-CGcUGACGCCCuGAcGCAG-CCGg -3'
miRNA:   3'- -GCaGCaACUGCGGGcUUaUGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 18130 0.66 0.846776
Target:  5'- aCGUCGaacUUGuCGCCCGGcucgcGCAGcuuGCCGa -3'
miRNA:   3'- -GCAGC---AACuGCGGGCUua---UGUC---UGGC- -5'
26739 3' -52.2 NC_005808.1 + 13696 0.66 0.846776
Target:  5'- uGUCGUcGGCGUCCaucugcccgGAAUACuuguugagguAGGCCGa -3'
miRNA:   3'- gCAGCAaCUGCGGG---------CUUAUG----------UCUGGC- -5'
26739 3' -52.2 NC_005808.1 + 8462 0.66 0.846776
Target:  5'- gCGUCGagGugGCCUGcGAUgccGCAG-CCGa -3'
miRNA:   3'- -GCAGCaaCugCGGGC-UUA---UGUCuGGC- -5'
26739 3' -52.2 NC_005808.1 + 40228 0.66 0.855472
Target:  5'- --aCGcgGGCGUCUGccacGUGCAGGCCGa -3'
miRNA:   3'- gcaGCaaCUGCGGGCu---UAUGUCUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.