Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26739 | 5' | -61.8 | NC_005808.1 | + | 7425 | 1.09 | 0.000139 |
Target: 5'- gAGCAGCGGGCGCCCGGACACUUCCUCg -3' miRNA: 3'- -UCGUCGCCCGCGGGCCUGUGAAGGAG- -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 41901 | 0.71 | 0.135216 |
Target: 5'- gGGCGGUaucuuGGGCGCCCGGccgGCGCcgCCg- -3' miRNA: 3'- -UCGUCG-----CCCGCGGGCC---UGUGaaGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 18702 | 0.7 | 0.15078 |
Target: 5'- aAGCcGCGGGCGU--GGcGCACUUCCUUg -3' miRNA: 3'- -UCGuCGCCCGCGggCC-UGUGAAGGAG- -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 33865 | 0.7 | 0.159159 |
Target: 5'- cGGUAGCGccGCGCCCgccGGGCACaUCUUCg -3' miRNA: 3'- -UCGUCGCc-CGCGGG---CCUGUGaAGGAG- -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 42208 | 0.7 | 0.167956 |
Target: 5'- uGCuGGUGGGCGCCCuGGGCAUcgUCUa -3' miRNA: 3'- uCG-UCGCCCGCGGG-CCUGUGaaGGAg -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 9221 | 0.7 | 0.167956 |
Target: 5'- cGCAcguucuGCGGcGCGCCCGGcgGCAgUUCCa- -3' miRNA: 3'- uCGU------CGCC-CGCGGGCC--UGUgAAGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 10267 | 0.7 | 0.172516 |
Target: 5'- gGGCGGCGGuuGUCgGGACGCcggCCUUg -3' miRNA: 3'- -UCGUCGCCcgCGGgCCUGUGaa-GGAG- -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 37056 | 0.69 | 0.191876 |
Target: 5'- cGUGGCGGGCGaCCUGGGCGgaaCCUg -3' miRNA: 3'- uCGUCGCCCGC-GGGCCUGUgaaGGAg -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 33323 | 0.69 | 0.197005 |
Target: 5'- cGCAGCcGGUGUaCCGGGCcgaccGCUUCCUg -3' miRNA: 3'- uCGUCGcCCGCG-GGCCUG-----UGAAGGAg -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 34322 | 0.69 | 0.200666 |
Target: 5'- cGGCAGCGuGGCccuggaagccgaauGCCCGGAUgaUUCCa- -3' miRNA: 3'- -UCGUCGC-CCG--------------CGGGCCUGugAAGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 14759 | 0.69 | 0.202253 |
Target: 5'- gAGCAGCGGcGCGgCCGG-CGCcaCCg- -3' miRNA: 3'- -UCGUCGCC-CGCgGGCCuGUGaaGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 32590 | 0.69 | 0.202253 |
Target: 5'- gGGCGGgggcCGGGCGCgCGG-CACUUUCg- -3' miRNA: 3'- -UCGUC----GCCCGCGgGCCuGUGAAGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 7381 | 0.69 | 0.202253 |
Target: 5'- cAGCGGCGGGCaCCgCGGcgAC-CUUCCa- -3' miRNA: 3'- -UCGUCGCCCGcGG-GCC--UGuGAAGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 15861 | 0.68 | 0.218732 |
Target: 5'- cGCAGCGGGCGCgcuggCGGugGCccggCUUUg -3' miRNA: 3'- uCGUCGCCCGCGg----GCCugUGaa--GGAG- -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 15145 | 0.68 | 0.218732 |
Target: 5'- uGGCGGCGGauGCGCCCaGGGCgacgGCUgauguugcUCCUg -3' miRNA: 3'- -UCGUCGCC--CGCGGG-CCUG----UGA--------AGGAg -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 8172 | 0.68 | 0.224474 |
Target: 5'- uGC-GCGuGCGCCCGGAUGCUgCCg- -3' miRNA: 3'- uCGuCGCcCGCGGGCCUGUGAaGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 13743 | 0.68 | 0.230344 |
Target: 5'- cGUGGCGcGGCGCUgGGACAgCUUCg-- -3' miRNA: 3'- uCGUCGC-CCGCGGgCCUGU-GAAGgag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 16345 | 0.68 | 0.230344 |
Target: 5'- aGGcCGGCGGGUGCCCGuGC-CUUCg-- -3' miRNA: 3'- -UC-GUCGCCCGCGGGCcUGuGAAGgag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 42413 | 0.68 | 0.230344 |
Target: 5'- cGGCAGCGugacGGUGCCCagcgacaccgGGGCGCaUCCg- -3' miRNA: 3'- -UCGUCGC----CCGCGGG----------CCUGUGaAGGag -5' |
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26739 | 5' | -61.8 | NC_005808.1 | + | 28592 | 0.67 | 0.248734 |
Target: 5'- cGGCAGCGuGGUG-UCGGuCAgUUCCUUg -3' miRNA: 3'- -UCGUCGC-CCGCgGGCCuGUgAAGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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