miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26739 5' -61.8 NC_005808.1 + 7381 0.69 0.202253
Target:  5'- cAGCGGCGGGCaCCgCGGcgAC-CUUCCa- -3'
miRNA:   3'- -UCGUCGCCCGcGG-GCC--UGuGAAGGag -5'
26739 5' -61.8 NC_005808.1 + 7425 1.09 0.000139
Target:  5'- gAGCAGCGGGCGCCCGGACACUUCCUCg -3'
miRNA:   3'- -UCGUCGCCCGCGGGCCUGUGAAGGAG- -5'
26739 5' -61.8 NC_005808.1 + 7544 0.66 0.288419
Target:  5'- cGGCGGCGugcucgaucugcGGCGCCaccggcuUGGACACgUCCa- -3'
miRNA:   3'- -UCGUCGC------------CCGCGG-------GCCUGUGaAGGag -5'
26739 5' -61.8 NC_005808.1 + 7611 0.66 0.303699
Target:  5'- cAGCAcGUGGucGCGCagcgCCGGACACguggCCUUg -3'
miRNA:   3'- -UCGU-CGCC--CGCG----GGCCUGUGaa--GGAG- -5'
26739 5' -61.8 NC_005808.1 + 8172 0.68 0.224474
Target:  5'- uGC-GCGuGCGCCCGGAUGCUgCCg- -3'
miRNA:   3'- uCGuCGCcCGCGGGCCUGUGAaGGag -5'
26739 5' -61.8 NC_005808.1 + 9221 0.7 0.167956
Target:  5'- cGCAcguucuGCGGcGCGCCCGGcgGCAgUUCCa- -3'
miRNA:   3'- uCGU------CGCC-CGCGGGCC--UGUgAAGGag -5'
26739 5' -61.8 NC_005808.1 + 10267 0.7 0.172516
Target:  5'- gGGCGGCGGuuGUCgGGACGCcggCCUUg -3'
miRNA:   3'- -UCGUCGCCcgCGGgCCUGUGaa-GGAG- -5'
26739 5' -61.8 NC_005808.1 + 12514 0.66 0.279962
Target:  5'- gGGCcGU-GGCGCCCGGGCGCcgcacaaaggauauUUCCg- -3'
miRNA:   3'- -UCGuCGcCCGCGGGCCUGUG--------------AAGGag -5'
26739 5' -61.8 NC_005808.1 + 13456 0.67 0.255128
Target:  5'- uGGCGGCcucGGGCGCggugUCGGGCAUgaCCUg -3'
miRNA:   3'- -UCGUCG---CCCGCG----GGCCUGUGaaGGAg -5'
26739 5' -61.8 NC_005808.1 + 13743 0.68 0.230344
Target:  5'- cGUGGCGcGGCGCUgGGACAgCUUCg-- -3'
miRNA:   3'- uCGUCGC-CCGCGGgCCUGU-GAAGgag -5'
26739 5' -61.8 NC_005808.1 + 14759 0.69 0.202253
Target:  5'- gAGCAGCGGcGCGgCCGG-CGCcaCCg- -3'
miRNA:   3'- -UCGUCGCC-CGCgGGCCuGUGaaGGag -5'
26739 5' -61.8 NC_005808.1 + 15145 0.68 0.218732
Target:  5'- uGGCGGCGGauGCGCCCaGGGCgacgGCUgauguugcUCCUg -3'
miRNA:   3'- -UCGUCGCC--CGCGGG-CCUG----UGA--------AGGAg -5'
26739 5' -61.8 NC_005808.1 + 15861 0.68 0.218732
Target:  5'- cGCAGCGGGCGCgcuggCGGugGCccggCUUUg -3'
miRNA:   3'- uCGUCGCCCGCGg----GCCugUGaa--GGAG- -5'
26739 5' -61.8 NC_005808.1 + 16345 0.68 0.230344
Target:  5'- aGGcCGGCGGGUGCCCGuGC-CUUCg-- -3'
miRNA:   3'- -UC-GUCGCCCGCGGGCcUGuGAAGgag -5'
26739 5' -61.8 NC_005808.1 + 18702 0.7 0.15078
Target:  5'- aAGCcGCGGGCGU--GGcGCACUUCCUUg -3'
miRNA:   3'- -UCGuCGCCCGCGggCC-UGUGAAGGAG- -5'
26739 5' -61.8 NC_005808.1 + 22047 0.67 0.26832
Target:  5'- gAGCAGCaagcggGGGCGCCgcaucgUGuGGCGCUUUCUg -3'
miRNA:   3'- -UCGUCG------CCCGCGG------GC-CUGUGAAGGAg -5'
26739 5' -61.8 NC_005808.1 + 28592 0.67 0.248734
Target:  5'- cGGCAGCGuGGUG-UCGGuCAgUUCCUUg -3'
miRNA:   3'- -UCGUCGC-CCGCgGGCCuGUgAAGGAG- -5'
26739 5' -61.8 NC_005808.1 + 30083 0.66 0.296347
Target:  5'- ---uGUGcGGCGCCCGGGCGCcacggcCCUUg -3'
miRNA:   3'- ucguCGC-CCGCGGGCCUGUGaa----GGAG- -5'
26739 5' -61.8 NC_005808.1 + 32590 0.69 0.202253
Target:  5'- gGGCGGgggcCGGGCGCgCGG-CACUUUCg- -3'
miRNA:   3'- -UCGUC----GCCCGCGgGCCuGUGAAGGag -5'
26739 5' -61.8 NC_005808.1 + 33179 0.67 0.255128
Target:  5'- uGCggaAGUGGGCGCCCucGGCACggCCa- -3'
miRNA:   3'- uCG---UCGCCCGCGGGc-CUGUGaaGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.