miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 307 0.66 0.582175
Target:  5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3'
miRNA:   3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 393 0.69 0.432963
Target:  5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5'
26740 3' -55.8 NC_005808.1 + 455 0.67 0.505749
Target:  5'- cUGCGCGGcCAGC--UUGCgGGCGCUGu -3'
miRNA:   3'- -ACGCGUCaGUCGcuAACG-UCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 608 0.68 0.474294
Target:  5'- cUGCG-GGUCGGCca--GCAGCGCCGu -3'
miRNA:   3'- -ACGCgUCAGUCGcuaaCGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 1348 0.7 0.386438
Target:  5'- aGcCGUGGUCGGCGGccUUGC-GCAuCCGGc -3'
miRNA:   3'- aC-GCGUCAGUCGCU--AACGuCGU-GGCC- -5'
26740 3' -55.8 NC_005808.1 + 1463 0.79 0.092255
Target:  5'- gGCGCGGUCGGCGGccuccugGCAG-GCCGGg -3'
miRNA:   3'- aCGCGUCAGUCGCUaa-----CGUCgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 2128 0.69 0.414533
Target:  5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3'
miRNA:   3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5'
26740 3' -55.8 NC_005808.1 + 2842 0.69 0.414533
Target:  5'- cGCGCAG-CGGCGc---CAGCACCa- -3'
miRNA:   3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 3562 0.68 0.49516
Target:  5'- aGCGCAG-CAGCGGgcuggGCGuaCACCGa -3'
miRNA:   3'- aCGCGUCaGUCGCUaa---CGUc-GUGGCc -5'
26740 3' -55.8 NC_005808.1 + 4250 0.76 0.145966
Target:  5'- gGCGUAGUCGGUGccgGCcgucAGCGCCGGc -3'
miRNA:   3'- aCGCGUCAGUCGCuaaCG----UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 4381 0.7 0.368419
Target:  5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3'
miRNA:   3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 5012 0.67 0.505749
Target:  5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3'
miRNA:   3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 5242 0.67 0.505749
Target:  5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3'
miRNA:   3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5'
26740 3' -55.8 NC_005808.1 + 6176 0.67 0.565524
Target:  5'- aGCGCAGgccggucuugccgCAGCGuUUGCaggugacGGCGCgCGGc -3'
miRNA:   3'- aCGCGUCa------------GUCGCuAACG-------UCGUG-GCC- -5'
26740 3' -55.8 NC_005808.1 + 7311 0.73 0.251549
Target:  5'- gGCGCcgucgauGGUCuGCGAacGCAGCAgCCGGu -3'
miRNA:   3'- aCGCG-------UCAGuCGCUaaCGUCGU-GGCC- -5'
26740 3' -55.8 NC_005808.1 + 7537 0.66 0.604523
Target:  5'- gUGCGCucggCGGCGugcucgaucUGCGGCGCCa- -3'
miRNA:   3'- -ACGCGuca-GUCGCua-------ACGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 7599 0.68 0.443848
Target:  5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3'
miRNA:   3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 7749 1.1 0.000538
Target:  5'- cUGCGCAGUCAGCGAUUGCAGCACCGGc -3'
miRNA:   3'- -ACGCGUCAGUCGCUAACGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8305 0.68 0.443848
Target:  5'- aGUGCAGcCAGCGGU-GC-GCGCUGc -3'
miRNA:   3'- aCGCGUCaGUCGCUAaCGuCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 8656 0.66 0.593332
Target:  5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3'
miRNA:   3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.