miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 14359 0.68 0.484673
Target:  5'- cGCGguGUCcuggaaGGCGGggGCAuccGCGCCGcGg -3'
miRNA:   3'- aCGCguCAG------UCGCUaaCGU---CGUGGC-C- -5'
26740 3' -55.8 NC_005808.1 + 30179 0.7 0.34249
Target:  5'- gGCGcCAGUCGGUGAagGCcaugaaguAGCcGCCGGg -3'
miRNA:   3'- aCGC-GUCAGUCGCUaaCG--------UCG-UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8686 0.7 0.359628
Target:  5'- cGCGCAccUCGGCG-UUGguGUACUGGc -3'
miRNA:   3'- aCGCGUc-AGUCGCuAACguCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 9324 0.7 0.377356
Target:  5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3'
miRNA:   3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5'
26740 3' -55.8 NC_005808.1 + 1348 0.7 0.386438
Target:  5'- aGcCGUGGUCGGCGGccUUGC-GCAuCCGGc -3'
miRNA:   3'- aC-GCGUCAGUCGCU--AACGuCGU-GGCC- -5'
26740 3' -55.8 NC_005808.1 + 13394 0.69 0.395663
Target:  5'- cGCGCGGUUguaGGCGGcaucgUUGCGGUAaCGGu -3'
miRNA:   3'- aCGCGUCAG---UCGCU-----AACGUCGUgGCC- -5'
26740 3' -55.8 NC_005808.1 + 39051 0.69 0.403144
Target:  5'- gGCGCGGUUGGCGGgacugcgcggugUGCGGCugUa- -3'
miRNA:   3'- aCGCGUCAGUCGCUa-----------ACGUCGugGcc -5'
26740 3' -55.8 NC_005808.1 + 15571 0.69 0.433946
Target:  5'- gGCGCcGUCAGUGAcgacGC-GCugCGGa -3'
miRNA:   3'- aCGCGuCAGUCGCUaa--CGuCGugGCC- -5'
26740 3' -55.8 NC_005808.1 + 608 0.68 0.474294
Target:  5'- cUGCG-GGUCGGCca--GCAGCGCCGu -3'
miRNA:   3'- -ACGCgUCAGUCGcuaaCGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 33153 0.71 0.310009
Target:  5'- gUGCGCgaAGUgGGCGAUggUGgAGUugCGGa -3'
miRNA:   3'- -ACGCG--UCAgUCGCUA--ACgUCGugGCC- -5'
26740 3' -55.8 NC_005808.1 + 23745 0.72 0.279927
Target:  5'- cGCGCAG-CAGCGccAUgccgGCGcCACCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC--UAa---CGUcGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 13280 0.73 0.252212
Target:  5'- gGCGUcuuUCAGCgccGAUUGCAGCgcGCCGGg -3'
miRNA:   3'- aCGCGuc-AGUCG---CUAACGUCG--UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 1463 0.79 0.092255
Target:  5'- gGCGCGGUCGGCGGccuccugGCAG-GCCGGg -3'
miRNA:   3'- aCGCGUCAGUCGCUaa-----CGUCgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 4250 0.76 0.145966
Target:  5'- gGCGUAGUCGGUGccgGCcgucAGCGCCGGc -3'
miRNA:   3'- aCGCGUCAGUCGCuaaCG----UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 19069 0.74 0.192768
Target:  5'- aGCGUguccucgccgaGGUCAcGCGAUUGCAG-GCCGGc -3'
miRNA:   3'- aCGCG-----------UCAGU-CGCUAACGUCgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8663 0.74 0.198112
Target:  5'- cGCGCGGUCGGC-AUUGC-GUGCCGc -3'
miRNA:   3'- aCGCGUCAGUCGcUAACGuCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 29600 0.74 0.220791
Target:  5'- cGCGCGGUUuGCcaGUUGUccAGCGCCGGg -3'
miRNA:   3'- aCGCGUCAGuCGc-UAACG--UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 24555 0.73 0.226796
Target:  5'- cGCGCAGcgCGGCGAUgGCGagGCCGGc -3'
miRNA:   3'- aCGCGUCa-GUCGCUAaCGUcgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 7311 0.73 0.251549
Target:  5'- gGCGCcgucgauGGUCuGCGAacGCAGCAgCCGGu -3'
miRNA:   3'- aCGCG-------UCAGuCGCUaaCGUCGU-GGCC- -5'
26740 3' -55.8 NC_005808.1 + 39846 0.73 0.252212
Target:  5'- gGCaGUGGUCGGCacgcccgaGCAGCGCCGGg -3'
miRNA:   3'- aCG-CGUCAGUCGcuaa----CGUCGUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.