miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 9040 0.7 0.350985
Target:  5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 14766 0.68 0.474294
Target:  5'- gGCGCGGcCGGCGccaccgcggGCAGCGCgCGc -3'
miRNA:   3'- aCGCGUCaGUCGCuaa------CGUCGUG-GCc -5'
26740 3' -55.8 NC_005808.1 + 31165 0.68 0.484673
Target:  5'- cGCGCcuuaUCGGCGAccUGCA-CGCCGGc -3'
miRNA:   3'- aCGCGuc--AGUCGCUa-ACGUcGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 15137 0.66 0.61125
Target:  5'- gUGCGCGGcgcgcuggcauacCAGCGccagggccUGCGGCcGCCGGg -3'
miRNA:   3'- -ACGCGUCa------------GUCGCua------ACGUCG-UGGCC- -5'
26740 3' -55.8 NC_005808.1 + 19763 0.7 0.377356
Target:  5'- cGCGCuGUCGGCuGUcgGCAGCGCgGc -3'
miRNA:   3'- aCGCGuCAGUCGcUAa-CGUCGUGgCc -5'
26740 3' -55.8 NC_005808.1 + 13728 0.7 0.386438
Target:  5'- cGC-CAG-CAGCGAggacguggcGCGGCGCUGGg -3'
miRNA:   3'- aCGcGUCaGUCGCUaa-------CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 15475 0.69 0.404086
Target:  5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3'
miRNA:   3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 2128 0.69 0.414533
Target:  5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3'
miRNA:   3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5'
26740 3' -55.8 NC_005808.1 + 393 0.69 0.432963
Target:  5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5'
26740 3' -55.8 NC_005808.1 + 34439 0.68 0.453877
Target:  5'- gGCGCAcgcgCAGgGAc-GCAGCGCCGa -3'
miRNA:   3'- aCGCGUca--GUCgCUaaCGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 7599 0.68 0.443848
Target:  5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3'
miRNA:   3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8993 0.69 0.424173
Target:  5'- cGUGCcGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGCGuCaGUCGCUAaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 4381 0.7 0.368419
Target:  5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3'
miRNA:   3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 8305 0.68 0.443848
Target:  5'- aGUGCAGcCAGCGGU-GC-GCGCUGc -3'
miRNA:   3'- aCGCGUCaGUCGCUAaCGuCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 27744 0.7 0.368419
Target:  5'- gGCGCc--CAGCG--UGCGGCGCUGGc -3'
miRNA:   3'- aCGCGucaGUCGCuaACGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 2842 0.69 0.414533
Target:  5'- cGCGCAG-CGGCGc---CAGCACCa- -3'
miRNA:   3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 20423 0.68 0.452868
Target:  5'- cGCGCAGauggugcgcgaauUCGGCaagGAcaagUGCAGCACCa- -3'
miRNA:   3'- aCGCGUC-------------AGUCG---CUa---ACGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 27674 0.68 0.474294
Target:  5'- cGCGCAGUCGGCacUUG-AG-GCCGGc -3'
miRNA:   3'- aCGCGUCAGUCGcuAACgUCgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 18838 0.7 0.377356
Target:  5'- gGCGCA-UCGGCccg-GUGGCGCCGGc -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 17872 0.69 0.395663
Target:  5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3'
miRNA:   3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.