miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26740 3' -55.8 NC_005808.1 + 5012 0.67 0.505749
Target:  5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3'
miRNA:   3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 307 0.66 0.582175
Target:  5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3'
miRNA:   3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 31165 0.68 0.484673
Target:  5'- cGCGCcuuaUCGGCGAccUGCA-CGCCGGc -3'
miRNA:   3'- aCGCGuc--AGUCGCUa-ACGUcGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 2128 0.69 0.414533
Target:  5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3'
miRNA:   3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5'
26740 3' -55.8 NC_005808.1 + 6176 0.67 0.565524
Target:  5'- aGCGCAGgccggucuugccgCAGCGuUUGCaggugacGGCGCgCGGc -3'
miRNA:   3'- aCGCGUCa------------GUCGCuAACG-------UCGUG-GCC- -5'
26740 3' -55.8 NC_005808.1 + 21834 0.67 0.527209
Target:  5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3'
miRNA:   3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 8656 0.66 0.593332
Target:  5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3'
miRNA:   3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 7537 0.66 0.604523
Target:  5'- gUGCGCucggCGGCGugcucgaucUGCGGCGCCa- -3'
miRNA:   3'- -ACGCGuca-GUCGCua-------ACGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 15475 0.69 0.404086
Target:  5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3'
miRNA:   3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 17872 0.69 0.395663
Target:  5'- cGCGCAGgcgCGGUGGaaGCGGC-CCGa -3'
miRNA:   3'- aCGCGUCa--GUCGCUaaCGUCGuGGCc -5'
26740 3' -55.8 NC_005808.1 + 8993 0.69 0.424173
Target:  5'- cGUGCcGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGCGuCaGUCGCUAaCGuCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 7599 0.68 0.443848
Target:  5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3'
miRNA:   3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 2842 0.69 0.414533
Target:  5'- cGCGCAG-CGGCGc---CAGCACCa- -3'
miRNA:   3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5'
26740 3' -55.8 NC_005808.1 + 24555 0.73 0.226796
Target:  5'- cGCGCAGcgCGGCGAUgGCGagGCCGGc -3'
miRNA:   3'- aCGCGUCa-GUCGCUAaCGUcgUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 11250 0.66 0.571062
Target:  5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3'
miRNA:   3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 13904 0.67 0.56
Target:  5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3'
miRNA:   3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5'
26740 3' -55.8 NC_005808.1 + 18716 0.67 0.548999
Target:  5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3'
miRNA:   3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5'
26740 3' -55.8 NC_005808.1 + 28576 0.67 0.527209
Target:  5'- cGCGCAcGUCGGCcaccgGCAGCGuggugUCGGu -3'
miRNA:   3'- aCGCGU-CAGUCGcuaa-CGUCGU-----GGCC- -5'
26740 3' -55.8 NC_005808.1 + 8686 0.7 0.359628
Target:  5'- cGCGCAccUCGGCG-UUGguGUACUGGc -3'
miRNA:   3'- aCGCGUc-AGUCGCuAACguCGUGGCC- -5'
26740 3' -55.8 NC_005808.1 + 9324 0.7 0.377356
Target:  5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3'
miRNA:   3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.