miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 3' -53.6 NC_005808.1 + 9824 1.12 0.000624
Target:  5'- aGCGUUUGCGCAUCACGCUGCACCUCGg -3'
miRNA:   3'- -CGCAAACGCGUAGUGCGACGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 3647 0.77 0.192116
Target:  5'- -gGUUUGCGUuuacUCACGCcaGCACCUCGu -3'
miRNA:   3'- cgCAAACGCGu---AGUGCGa-CGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 6622 0.76 0.220378
Target:  5'- aGCGg--GCGCGUgGCGCUGCGCg-CGg -3'
miRNA:   3'- -CGCaaaCGCGUAgUGCGACGUGgaGC- -5'
26741 3' -53.6 NC_005808.1 + 12507 0.75 0.25889
Target:  5'- gGCGUUUuucaugaacaGCGCGUCGaggUGCUGCucgACCUCGg -3'
miRNA:   3'- -CGCAAA----------CGCGUAGU---GCGACG---UGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 8665 0.74 0.302725
Target:  5'- cGCGgucggcaUUGCGUGcCGCGC-GCACCUCGg -3'
miRNA:   3'- -CGCa------AACGCGUaGUGCGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 5619 0.73 0.343453
Target:  5'- uGCGUUUcGCGCGUgGCGCggcGCAgCUUGc -3'
miRNA:   3'- -CGCAAA-CGCGUAgUGCGa--CGUgGAGC- -5'
26741 3' -53.6 NC_005808.1 + 14853 0.72 0.378777
Target:  5'- gGCGgccaGCGCcgCACGCUggGCGCCUUu -3'
miRNA:   3'- -CGCaaa-CGCGuaGUGCGA--CGUGGAGc -5'
26741 3' -53.6 NC_005808.1 + 24142 0.72 0.39733
Target:  5'- cCGgcUGCGCGcCugGCccaGCGCCUCGa -3'
miRNA:   3'- cGCaaACGCGUaGugCGa--CGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 4376 0.72 0.406823
Target:  5'- gGCGgaUGCGCAgccaggcgccgUCGCGCcGgGCCUUGa -3'
miRNA:   3'- -CGCaaACGCGU-----------AGUGCGaCgUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 12135 0.72 0.406823
Target:  5'- cGCGac-GCGCcaCGCGCUGCGCUUCc -3'
miRNA:   3'- -CGCaaaCGCGuaGUGCGACGUGGAGc -5'
26741 3' -53.6 NC_005808.1 + 7028 0.71 0.416457
Target:  5'- gGCGUUUGUGCcgCcUGUUGCagcaggcgcaugGCCUCGg -3'
miRNA:   3'- -CGCAAACGCGuaGuGCGACG------------UGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 9899 0.7 0.466632
Target:  5'- cGCGUg-GCGaUGUCGaGCUGCACUUCGa -3'
miRNA:   3'- -CGCAaaCGC-GUAGUgCGACGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 14809 0.7 0.47704
Target:  5'- uGCGgcUGCGCG--GCGC-GCGCUUCGu -3'
miRNA:   3'- -CGCaaACGCGUagUGCGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 34759 0.7 0.47704
Target:  5'- aGCGcgUGCGCcugGUCAUcgugcaGCcGCGCCUCGa -3'
miRNA:   3'- -CGCaaACGCG---UAGUG------CGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 10665 0.7 0.487562
Target:  5'- -aGUcgUGCGUGUCGaGCaGCGCCUCGa -3'
miRNA:   3'- cgCAa-ACGCGUAGUgCGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 24802 0.69 0.519753
Target:  5'- cGCGUUgaaGUcgccguacaGCAUCugGCUGCGCaauggCUCGg -3'
miRNA:   3'- -CGCAAa--CG---------CGUAGugCGACGUG-----GAGC- -5'
26741 3' -53.6 NC_005808.1 + 35432 0.69 0.519753
Target:  5'- gGCGUcaGCGCGUCGgGCcUGgGCUUCa -3'
miRNA:   3'- -CGCAaaCGCGUAGUgCG-ACgUGGAGc -5'
26741 3' -53.6 NC_005808.1 + 6010 0.69 0.563889
Target:  5'- aGCGUgcGUGCcguUCugGauagGCACCUCGc -3'
miRNA:   3'- -CGCAaaCGCGu--AGugCga--CGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 15127 0.68 0.586341
Target:  5'- cGCGUggugcgUGCGCggCGCGCUggcauaccaGCGCCagGg -3'
miRNA:   3'- -CGCAa-----ACGCGuaGUGCGA---------CGUGGagC- -5'
26741 3' -53.6 NC_005808.1 + 30472 0.68 0.586341
Target:  5'- cGCGUg-GCGCGUCGCGCca-ACCUg- -3'
miRNA:   3'- -CGCAaaCGCGUAGUGCGacgUGGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.