miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26741 3' -53.6 NC_005808.1 + 34126 0.66 0.754044
Target:  5'- cGCGUcggcUGCgGCAUCGCag-GCcACCUCGa -3'
miRNA:   3'- -CGCAa---ACG-CGUAGUGcgaCG-UGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 40027 0.67 0.676969
Target:  5'- aGCGc--GCGCA-CGCGCUGgGCCgugUCGc -3'
miRNA:   3'- -CGCaaaCGCGUaGUGCGACgUGG---AGC- -5'
26741 3' -53.6 NC_005808.1 + 12549 0.67 0.688213
Target:  5'- gGCGUcggugaauuucUUGCcgGCcUCGCGCUGCGCggCGa -3'
miRNA:   3'- -CGCA-----------AACG--CGuAGUGCGACGUGgaGC- -5'
26741 3' -53.6 NC_005808.1 + 37463 0.66 0.699401
Target:  5'- cCGccUGCGCggCACGUUGCAgUUCa -3'
miRNA:   3'- cGCaaACGCGuaGUGCGACGUgGAGc -5'
26741 3' -53.6 NC_005808.1 + 11081 0.66 0.721555
Target:  5'- cGUGUccGgGUcgCGCGCgaGCACCUUGu -3'
miRNA:   3'- -CGCAaaCgCGuaGUGCGa-CGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 14770 0.66 0.740092
Target:  5'- aGCGUgucggUGUcgaucuGCuUCACGaugucgcuggaaacCUGCACCUCGg -3'
miRNA:   3'- -CGCAa----ACG------CGuAGUGC--------------GACGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 27752 0.66 0.74333
Target:  5'- -----cGCGCAaCuCGCUGC-CCUCGu -3'
miRNA:   3'- cgcaaaCGCGUaGuGCGACGuGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 38890 0.66 0.74333
Target:  5'- aGCGgaUGCGCcgCAUgggGCaGCGCgUCGc -3'
miRNA:   3'- -CGCaaACGCGuaGUG---CGaCGUGgAGC- -5'
26741 3' -53.6 NC_005808.1 + 9517 0.66 0.74333
Target:  5'- gGCGaacagUG-GCAUCAUGCUGCgGCCcuguUCGg -3'
miRNA:   3'- -CGCaa---ACgCGUAGUGCGACG-UGG----AGC- -5'
26741 3' -53.6 NC_005808.1 + 1667 0.67 0.665679
Target:  5'- cUGUUUGCGCGUgAUGCUGCcgcGCagguagUCGa -3'
miRNA:   3'- cGCAAACGCGUAgUGCGACG---UGg-----AGC- -5'
26741 3' -53.6 NC_005808.1 + 27837 0.67 0.643011
Target:  5'- cGCGgugGCGCcggcCGCGCcGCugCUCa -3'
miRNA:   3'- -CGCaaaCGCGua--GUGCGaCGugGAGc -5'
26741 3' -53.6 NC_005808.1 + 12608 0.68 0.608956
Target:  5'- --aUUUGCGCAUgGCGCcGaCGCgCUCGg -3'
miRNA:   3'- cgcAAACGCGUAgUGCGaC-GUG-GAGC- -5'
26741 3' -53.6 NC_005808.1 + 12507 0.75 0.25889
Target:  5'- gGCGUUUuucaugaacaGCGCGUCGaggUGCUGCucgACCUCGg -3'
miRNA:   3'- -CGCAAA----------CGCGUAGU---GCGACG---UGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 8665 0.74 0.302725
Target:  5'- cGCGgucggcaUUGCGUGcCGCGC-GCACCUCGg -3'
miRNA:   3'- -CGCa------AACGCGUaGUGCGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 14853 0.72 0.378777
Target:  5'- gGCGgccaGCGCcgCACGCUggGCGCCUUu -3'
miRNA:   3'- -CGCaaa-CGCGuaGUGCGA--CGUGGAGc -5'
26741 3' -53.6 NC_005808.1 + 24142 0.72 0.39733
Target:  5'- cCGgcUGCGCGcCugGCccaGCGCCUCGa -3'
miRNA:   3'- cGCaaACGCGUaGugCGa--CGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 12135 0.72 0.406823
Target:  5'- cGCGac-GCGCcaCGCGCUGCGCUUCc -3'
miRNA:   3'- -CGCaaaCGCGuaGUGCGACGUGGAGc -5'
26741 3' -53.6 NC_005808.1 + 9899 0.7 0.466632
Target:  5'- cGCGUg-GCGaUGUCGaGCUGCACUUCGa -3'
miRNA:   3'- -CGCAaaCGC-GUAGUgCGACGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 34759 0.7 0.47704
Target:  5'- aGCGcgUGCGCcugGUCAUcgugcaGCcGCGCCUCGa -3'
miRNA:   3'- -CGCaaACGCG---UAGUG------CGaCGUGGAGC- -5'
26741 3' -53.6 NC_005808.1 + 24802 0.69 0.519753
Target:  5'- cGCGUUgaaGUcgccguacaGCAUCugGCUGCGCaauggCUCGg -3'
miRNA:   3'- -CGCAAa--CG---------CGUAGugCGACGUG-----GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.