Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 5' | -59.9 | NC_005808.1 | + | 11091 | 1.09 | 0.00026 |
Target: 5'- uCGCGCGCGAGCACCUUGUCGGCUGCGg -3' miRNA: 3'- -GCGCGCGCUCGUGGAACAGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 30275 | 0.67 | 0.351088 |
Target: 5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3' miRNA: 3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 26049 | 0.67 | 0.351088 |
Target: 5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3' miRNA: 3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 8999 | 0.67 | 0.35945 |
Target: 5'- cCGCGCGgGGGCGCUUccagcaGGCgGCGc -3' miRNA: 3'- -GCGCGCgCUCGUGGAacag--CCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 23743 | 0.67 | 0.367095 |
Target: 5'- gGCGCGCaGcAGCGCCaUGcCGGCgccaccgggccgaUGCGc -3' miRNA: 3'- gCGCGCG-C-UCGUGGaACaGCCG-------------ACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14643 | 0.66 | 0.385362 |
Target: 5'- gGUGCGCaGAuugauaccuuGCACCUUGgccUGGgUGCGg -3' miRNA: 3'- gCGCGCG-CU----------CGUGGAACa--GCCgACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 36111 | 0.66 | 0.394269 |
Target: 5'- aGCGCGUGAauGCggGCCUgcgCGGCgUGCa -3' miRNA: 3'- gCGCGCGCU--CG--UGGAacaGCCG-ACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 28648 | 0.66 | 0.394269 |
Target: 5'- cCGCGCGC-AGUGCCagaUCGGUgccgGCGg -3' miRNA: 3'- -GCGCGCGcUCGUGGaacAGCCGa---CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 20024 | 0.66 | 0.411555 |
Target: 5'- gGCGCGCcugcaucacagGcAGCAUCUUGUCGagcaccaGUUGCGc -3' miRNA: 3'- gCGCGCG-----------C-UCGUGGAACAGC-------CGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 9897 | 0.67 | 0.342865 |
Target: 5'- gGCGCGUG-GCGa--UGUCGaGCUGCa -3' miRNA: 3'- gCGCGCGCuCGUggaACAGC-CGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 1332 | 0.67 | 0.334781 |
Target: 5'- cCGacaaGCGCGAGgaaGCCgugGUCGGCgGCc -3' miRNA: 3'- -GCg---CGCGCUCg--UGGaa-CAGCCGaCGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 38217 | 0.68 | 0.303852 |
Target: 5'- gGCGCGaCG-GCGCCU----GGCUGCGc -3' miRNA: 3'- gCGCGC-GCuCGUGGAacagCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 2348 | 0.75 | 0.099398 |
Target: 5'- gGCGCGCGuGCGCCgcaauUCGGcCUGCa -3' miRNA: 3'- gCGCGCGCuCGUGGaac--AGCC-GACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 24147 | 0.74 | 0.114287 |
Target: 5'- uGCGCGCcuggcccAGCGCCUcGaCGGCUGCGc -3' miRNA: 3'- gCGCGCGc------UCGUGGAaCaGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 16075 | 0.73 | 0.138269 |
Target: 5'- cCGCGCGCG-GCGCCguagauggucgugUUGUugaccacgacCGGCUGCa -3' miRNA: 3'- -GCGCGCGCuCGUGG-------------AACA----------GCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 26241 | 0.72 | 0.170878 |
Target: 5'- uGCGCGCGucgccgaaggcacgGGCACCcgccggccugGUCGGCUcGCGc -3' miRNA: 3'- gCGCGCGC--------------UCGUGGaa--------CAGCCGA-CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 4695 | 0.71 | 0.191665 |
Target: 5'- aGCGCgGCGAGaaugGCCggcaagUUGUUGGCUGCu -3' miRNA: 3'- gCGCG-CGCUCg---UGG------AACAGCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 22411 | 0.7 | 0.212961 |
Target: 5'- aGCGCGUGAcGUucgccagccacGCCUUGaCGGCgGCGg -3' miRNA: 3'- gCGCGCGCU-CG-----------UGGAACaGCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14427 | 0.7 | 0.218025 |
Target: 5'- gGCGCGCcugcGGCACCgUGUUGGgcgaaacCUGCGg -3' miRNA: 3'- gCGCGCGc---UCGUGGaACAGCC-------GACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 8882 | 0.7 | 0.218594 |
Target: 5'- gCGgGCGCGGGCAUCaUUGugaauggcgcuaUCGGCgGCGc -3' miRNA: 3'- -GCgCGCGCUCGUGG-AAC------------AGCCGaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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