Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 5' | -59.9 | NC_005808.1 | + | 1086 | 0.67 | 0.351088 |
Target: 5'- gGCGCGC--GUACUUcaUGUUGGCgGCGg -3' miRNA: 3'- gCGCGCGcuCGUGGA--ACAGCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 1332 | 0.67 | 0.334781 |
Target: 5'- cCGacaaGCGCGAGgaaGCCgugGUCGGCgGCc -3' miRNA: 3'- -GCg---CGCGCUCg--UGGaa-CAGCCGaCGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 2348 | 0.75 | 0.099398 |
Target: 5'- gGCGCGCGuGCGCCgcaauUCGGcCUGCa -3' miRNA: 3'- gCGCGCGCuCGUGGaac--AGCC-GACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 4206 | 0.68 | 0.296471 |
Target: 5'- gGC-CGCGAGCACgUcG-CGGCUuGCGg -3' miRNA: 3'- gCGcGCGCUCGUGgAaCaGCCGA-CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 4695 | 0.71 | 0.191665 |
Target: 5'- aGCGCgGCGAGaaugGCCggcaagUUGUUGGCUGCu -3' miRNA: 3'- gCGCG-CGCUCg---UGG------AACAGCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 5399 | 0.72 | 0.163231 |
Target: 5'- gCGCGcCGCGAGCACCUUcugcGUacgcuccaCGGC-GCGg -3' miRNA: 3'- -GCGC-GCGCUCGUGGAA----CA--------GCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 6720 | 0.67 | 0.342865 |
Target: 5'- gGCGCGCaucugcuuGAGCACggcGUCGGCcuugGCGc -3' miRNA: 3'- gCGCGCG--------CUCGUGgaaCAGCCGa---CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 7000 | 0.7 | 0.212961 |
Target: 5'- -aCGCGCGAGCGg---GUCGGCUcGCGu -3' miRNA: 3'- gcGCGCGCUCGUggaaCAGCCGA-CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 8434 | 0.66 | 0.402398 |
Target: 5'- gGCGuCGCGgaacaucGGCGCgaUGUCGGCgucgagguggccUGCGa -3' miRNA: 3'- gCGC-GCGC-------UCGUGgaACAGCCG------------ACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 8882 | 0.7 | 0.218594 |
Target: 5'- gCGgGCGCGGGCAUCaUUGugaauggcgcuaUCGGCgGCGc -3' miRNA: 3'- -GCgCGCGCUCGUGG-AAC------------AGCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 8999 | 0.67 | 0.35945 |
Target: 5'- cCGCGCGgGGGCGCUUccagcaGGCgGCGc -3' miRNA: 3'- -GCGCGCgCUCGUGGAacag--CCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 9897 | 0.67 | 0.342865 |
Target: 5'- gGCGCGUG-GCGa--UGUCGaGCUGCa -3' miRNA: 3'- gCGCGCGCuCGUggaACAGC-CGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 9905 | 0.66 | 0.376588 |
Target: 5'- aCGCG-GCGAGCAC---GUCGGCgaacUGCu -3' miRNA: 3'- -GCGCgCGCUCGUGgaaCAGCCG----ACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 11091 | 1.09 | 0.00026 |
Target: 5'- uCGCGCGCGAGCACCUUGUCGGCUGCGg -3' miRNA: 3'- -GCGCGCGCUCGUGGAACAGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14427 | 0.7 | 0.218025 |
Target: 5'- gGCGCGCcugcGGCACCgUGUUGGgcgaaacCUGCGg -3' miRNA: 3'- gCGCGCGc---UCGUGGaACAGCC-------GACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14643 | 0.66 | 0.385362 |
Target: 5'- gGUGCGCaGAuugauaccuuGCACCUUGgccUGGgUGCGg -3' miRNA: 3'- gCGCGCG-CU----------CGUGGAACa--GCCgACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14791 | 0.78 | 0.056326 |
Target: 5'- gCGCGCGCGAGgACgUgcugCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCUCgUGgAaca-GCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 16075 | 0.73 | 0.138269 |
Target: 5'- cCGCGCGCG-GCGCCguagauggucgugUUGUugaccacgacCGGCUGCa -3' miRNA: 3'- -GCGCGCGCuCGUGG-------------AACA----------GCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 18170 | 0.79 | 0.050207 |
Target: 5'- cCGCGCGCG-GCACCgacaaaucggGcCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCuCGUGGaa--------CaGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 19498 | 0.69 | 0.242408 |
Target: 5'- uCGC-CGUGGGCGCCgccGUUGGCgucgggGCGa -3' miRNA: 3'- -GCGcGCGCUCGUGGaa-CAGCCGa-----CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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