Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26743 | 5' | -59.9 | NC_005808.1 | + | 38217 | 0.68 | 0.303852 |
Target: 5'- gGCGCGaCG-GCGCCU----GGCUGCGc -3' miRNA: 3'- gCGCGC-GCuCGUGGAacagCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 37213 | 0.66 | 0.388909 |
Target: 5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3' miRNA: 3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 36111 | 0.66 | 0.394269 |
Target: 5'- aGCGCGUGAauGCggGCCUgcgCGGCgUGCa -3' miRNA: 3'- gCGCGCGCU--CG--UGGAacaGCCG-ACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 35508 | 0.69 | 0.275167 |
Target: 5'- uGCGCGUGGGCgcGCCguggGUaGGCcGCGg -3' miRNA: 3'- gCGCGCGCUCG--UGGaa--CAgCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 30275 | 0.67 | 0.351088 |
Target: 5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3' miRNA: 3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 29032 | 0.69 | 0.251239 |
Target: 5'- aGCGCGCGuucaacaucgccgugGGCACCgaGUCaGGCgGCc -3' miRNA: 3'- gCGCGCGC---------------UCGUGGaaCAG-CCGaCGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 28648 | 0.66 | 0.394269 |
Target: 5'- cCGCGCGC-AGUGCCagaUCGGUgccgGCGg -3' miRNA: 3'- -GCGCGCGcUCGUGGaacAGCCGa---CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 26241 | 0.72 | 0.170878 |
Target: 5'- uGCGCGCGucgccgaaggcacgGGCACCcgccggccugGUCGGCUcGCGc -3' miRNA: 3'- gCGCGCGC--------------UCGUGGaa--------CAGCCGA-CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 26049 | 0.67 | 0.351088 |
Target: 5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3' miRNA: 3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 24147 | 0.74 | 0.114287 |
Target: 5'- uGCGCGCcuggcccAGCGCCUcGaCGGCUGCGc -3' miRNA: 3'- gCGCGCGc------UCGUGGAaCaGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 23743 | 0.67 | 0.367095 |
Target: 5'- gGCGCGCaGcAGCGCCaUGcCGGCgccaccgggccgaUGCGc -3' miRNA: 3'- gCGCGCG-C-UCGUGGaACaGCCG-------------ACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 22726 | 0.67 | 0.35945 |
Target: 5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3' miRNA: 3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 22411 | 0.7 | 0.212961 |
Target: 5'- aGCGCGUGAcGUucgccagccacGCCUUGaCGGCgGCGg -3' miRNA: 3'- gCGCGCGCU-CG-----------UGGAACaGCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 20070 | 0.67 | 0.334781 |
Target: 5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3' miRNA: 3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 20024 | 0.66 | 0.411555 |
Target: 5'- gGCGCGCcugcaucacagGcAGCAUCUUGUCGagcaccaGUUGCGc -3' miRNA: 3'- gCGCGCG-----------C-UCGUGGAACAGC-------CGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 19755 | 0.66 | 0.376588 |
Target: 5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3' miRNA: 3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 19498 | 0.69 | 0.242408 |
Target: 5'- uCGC-CGUGGGCGCCgccGUUGGCgucgggGCGa -3' miRNA: 3'- -GCGcGCGCUCGUGGaa-CAGCCGa-----CGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 18170 | 0.79 | 0.050207 |
Target: 5'- cCGCGCGCG-GCACCgacaaaucggGcCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCuCGUGGaa--------CaGCCGACGC- -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 16075 | 0.73 | 0.138269 |
Target: 5'- cCGCGCGCG-GCGCCguagauggucgugUUGUugaccacgacCGGCUGCa -3' miRNA: 3'- -GCGCGCGCuCGUGG-------------AACA----------GCCGACGc -5' |
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26743 | 5' | -59.9 | NC_005808.1 | + | 14791 | 0.78 | 0.056326 |
Target: 5'- gCGCGCGCGAGgACgUgcugCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCUCgUGgAaca-GCCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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