Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26744 | 5' | -55 | NC_005808.1 | + | 163 | 0.67 | 0.598668 |
Target: 5'- cCGCAGGCGGaUGCgccCCGgUGUCGCUg- -3' miRNA: 3'- -GUGUUUGUCaACG---GGCgACAGCGGgg -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 3660 | 0.67 | 0.58747 |
Target: 5'- cCACAAGCAaccGgacGCCUGCacaaCGCCCCa -3' miRNA: 3'- -GUGUUUGU---Caa-CGGGCGaca-GCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 9517 | 0.68 | 0.554146 |
Target: 5'- gGCGAACAGUgGCaucaUGCUG-CGgCCCu -3' miRNA: 3'- gUGUUUGUCAaCGg---GCGACaGCgGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 11135 | 0.72 | 0.297769 |
Target: 5'- uGCGAGCAGUucgGCCUGCUGcugggcCGCCUg -3' miRNA: 3'- gUGUUUGUCAa--CGGGCGACa-----GCGGGg -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 13167 | 0.67 | 0.58747 |
Target: 5'- -uCGGcCAGUgucgGCCgCGCUGggCGCCCUu -3' miRNA: 3'- guGUUuGUCAa---CGG-GCGACa-GCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 15267 | 1.12 | 0.000434 |
Target: 5'- gCACAAACAGUUGCCCGCUGUCGCCCCa -3' miRNA: 3'- -GUGUUUGUCAACGGGCGACAGCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 15587 | 0.66 | 0.621144 |
Target: 5'- uCACGGuACAuauccGCgCCGCUGUaGCCCCa -3' miRNA: 3'- -GUGUU-UGUcaa--CG-GGCGACAgCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 16788 | 0.68 | 0.543156 |
Target: 5'- gGCGAuggucgcCAGUUGCCaGUUgGUCGCgCCCa -3' miRNA: 3'- gUGUUu------GUCAACGGgCGA-CAGCG-GGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 17588 | 0.71 | 0.363371 |
Target: 5'- -uCGGACGGcaaCCCGCUGUCgucgGCCCCc -3' miRNA: 3'- guGUUUGUCaacGGGCGACAG----CGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 17834 | 0.67 | 0.585234 |
Target: 5'- -uCGGGCGGguugaUGCCCGCcaccguggccucGUCGCCCa -3' miRNA: 3'- guGUUUGUCa----ACGGGCGa-----------CAGCGGGg -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 18501 | 0.68 | 0.499996 |
Target: 5'- gCGCAuguAGCGGggUGCCCGUgccccgcgcgGUCGCCgCu -3' miRNA: 3'- -GUGU---UUGUCa-ACGGGCGa---------CAGCGGgG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 27175 | 0.67 | 0.609896 |
Target: 5'- aACAAGCuguGGUUGCgCGUgcaucgGUCGUCCg -3' miRNA: 3'- gUGUUUG---UCAACGgGCGa-----CAGCGGGg -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 28077 | 0.66 | 0.666132 |
Target: 5'- aGCGGGCAGgUGgCCGCggcGUCGUauUCCg -3' miRNA: 3'- gUGUUUGUCaACgGGCGa--CAGCG--GGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 28889 | 0.66 | 0.666132 |
Target: 5'- gCugGcgUAGUUGCUgGCcGUCGCCgaCCa -3' miRNA: 3'- -GugUuuGUCAACGGgCGaCAGCGG--GG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 31053 | 0.69 | 0.489439 |
Target: 5'- gGCGGGCAGUccuaucaggaUGCCCGCUcgcaggGCCUCa -3' miRNA: 3'- gUGUUUGUCA----------ACGGGCGAcag---CGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 31633 | 0.69 | 0.458421 |
Target: 5'- aACAGguggccGCAGUgucCCCgGCUGUCGCCgCg -3' miRNA: 3'- gUGUU------UGUCAac-GGG-CGACAGCGGgG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 32860 | 0.75 | 0.217165 |
Target: 5'- cCGCAGACGGUcgGCgCCGagauUGUCGCgCCCg -3' miRNA: 3'- -GUGUUUGUCAa-CG-GGCg---ACAGCG-GGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 32869 | 0.71 | 0.354646 |
Target: 5'- cCACGAGCAGUUcGCCCGCg---GCUUCg -3' miRNA: 3'- -GUGUUUGUCAA-CGGGCGacagCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 33583 | 0.76 | 0.179315 |
Target: 5'- gACGAACuGGUgcgccGCCUGCUGgaagCGCCCCc -3' miRNA: 3'- gUGUUUG-UCAa----CGGGCGACa---GCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 34290 | 0.68 | 0.521403 |
Target: 5'- -cCGAGCAGcgcGCaCCGCUGgcugcacUGCCCCg -3' miRNA: 3'- guGUUUGUCaa-CG-GGCGACa------GCGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home