Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26744 | 5' | -55 | NC_005808.1 | + | 35399 | 0.67 | 0.598668 |
Target: 5'- aCGCAguccGAUGGcaaGCCCaGC-GUCGCCCCc -3' miRNA: 3'- -GUGU----UUGUCaa-CGGG-CGaCAGCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 39587 | 0.65 | 0.677324 |
Target: 5'- gACGAGCAGcuaUGaCCCGCcGcgccuUCGUCCCc -3' miRNA: 3'- gUGUUUGUCa--AC-GGGCGaC-----AGCGGGG- -5' |
|||||||
26744 | 5' | -55 | NC_005808.1 | + | 41755 | 0.68 | 0.547544 |
Target: 5'- aUACAGgccACGGUcgGCUCGCUGUCucugcgcgcgcucaaGCCCa -3' miRNA: 3'- -GUGUU---UGUCAa-CGGGCGACAG---------------CGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home