miRNA: 3'- -GugUuuGUCAACGGgCGaCAGCGG--GG- -5'
miRNA: 3'- gUGUUUGUCaACgGGCGa--CAGCG--GGG- -5'
miRNA: 3'- gUGUUUGUCa--AC-GGGCGaC-----AGCGGGG- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26744 | 5' | -55 | NC_005808.1 | + | 28889 | 0.66 | 0.666132 |
|
Target: 5'- gCugGcgUAGUUGCUgGCcGUCGCCgaCCa -3' miRNA: 3'- -GugUuuGUCAACGGgCGaCAGCGG--GG- -5' |
|||||||
| 26744 | 5' | -55 | NC_005808.1 | + | 28077 | 0.66 | 0.666132 |
|
Target: 5'- aGCGGGCAGgUGgCCGCggcGUCGUauUCCg -3' miRNA: 3'- gUGUUUGUCaACgGGCGa--CAGCG--GGG- -5' |
|||||||
| 26744 | 5' | -55 | NC_005808.1 | + | 39587 | 0.65 | 0.677324 |
|
Target: 5'- gACGAGCAGcuaUGaCCCGCcGcgccuUCGUCCCc -3' miRNA: 3'- gUGUUUGUCa--AC-GGGCGaC-----AGCGGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home