Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26745 | 5' | -54.5 | NC_005808.1 | + | 24572 | 0.68 | 0.545838 |
Target: 5'- gCGAGGCcggccacggucggGCCGUCCGGcgUGUccUUGCCg -3' miRNA: 3'- -GCUUCGa------------CGGCAGGUCa-ACGu-AGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 14971 | 0.68 | 0.539258 |
Target: 5'- uGAAGUcGCCGgucgCCAGaaugGCGUCGgCa -3' miRNA: 3'- gCUUCGaCGGCa---GGUCaa--CGUAGCgG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 18436 | 0.68 | 0.539258 |
Target: 5'- cCGAAGCgcgcaGCCGUCgAGgcGCuggGCCa -3' miRNA: 3'- -GCUUCGa----CGGCAGgUCaaCGuagCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 35094 | 0.68 | 0.528353 |
Target: 5'- cCGaAAGCgcgcGCCG-CCAGUUGCAagggGCCu -3' miRNA: 3'- -GC-UUCGa---CGGCaGGUCAACGUag--CGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 274 | 0.68 | 0.528353 |
Target: 5'- uGAGGCacGgCGUCCAGUaGCugCGCCg -3' miRNA: 3'- gCUUCGa-CgGCAGGUCAaCGuaGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 19711 | 0.68 | 0.528353 |
Target: 5'- gGAAGCUGCauagaGgcgCCGc--GCAUCGCCc -3' miRNA: 3'- gCUUCGACGg----Ca--GGUcaaCGUAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 3932 | 0.68 | 0.527268 |
Target: 5'- ---cGCUGCCGUCCGcgauggucacGUUGUAUuugcuggUGCCa -3' miRNA: 3'- gcuuCGACGGCAGGU----------CAACGUA-------GCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 28018 | 0.69 | 0.517532 |
Target: 5'- gGAAGaaGCCGaUCAuGUcgGCGUCGCCg -3' miRNA: 3'- gCUUCgaCGGCaGGU-CAa-CGUAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 39990 | 0.69 | 0.506799 |
Target: 5'- aCGAAGCUaaaGUCGuUCCGGUUGCAacagggCGgCa -3' miRNA: 3'- -GCUUCGA---CGGC-AGGUCAACGUa-----GCgG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 11575 | 0.69 | 0.506799 |
Target: 5'- uCGAAGCcaUGCCGcCCAGggccgccgGCuggcCGCCg -3' miRNA: 3'- -GCUUCG--ACGGCaGGUCaa------CGua--GCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 6661 | 0.69 | 0.506799 |
Target: 5'- cCGggGaaGCCGUCgUAGUUgGCcuugagGUCGCCa -3' miRNA: 3'- -GCuuCgaCGGCAG-GUCAA-CG------UAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 14083 | 0.69 | 0.485628 |
Target: 5'- -uAGGgUGCCagaaauuucGUCCAGUUGCuucuugagguuAUCGCCg -3' miRNA: 3'- gcUUCgACGG---------CAGGUCAACG-----------UAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 322 | 0.7 | 0.464888 |
Target: 5'- -aGGGCgUGCCGUaCCGGggGUcgUGCCa -3' miRNA: 3'- gcUUCG-ACGGCA-GGUCaaCGuaGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 37378 | 0.7 | 0.43467 |
Target: 5'- gCGAA-CUGCUGgguaUCCGGUUGCAg-GCCa -3' miRNA: 3'- -GCUUcGACGGC----AGGUCAACGUagCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 12637 | 0.71 | 0.396214 |
Target: 5'- uCGcuGCUGCCGUCCuuuGgcgucggGuCGUCGCCc -3' miRNA: 3'- -GCuuCGACGGCAGGu--Caa-----C-GUAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 28854 | 0.72 | 0.362653 |
Target: 5'- cCGAAGCUGUcccagcgccgcgccaCGUCCucgcugcuggcguAGUUGCuggccGUCGCCg -3' miRNA: 3'- -GCUUCGACG---------------GCAGG-------------UCAACG-----UAGCGG- -5' |
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26745 | 5' | -54.5 | NC_005808.1 | + | 15470 | 1.13 | 0.000438 |
Target: 5'- cCGAAGCUGCCGUCCAGUUGCAUCGCCa -3' miRNA: 3'- -GCUUCGACGGCAGGUCAACGUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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